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Aquatic Habitat Institute reports

Title	Author	Year	Link	SFEI Program
A Workshop on Toxicity Identification Evaluation (TIE's) in the San Francisco Bay Region: Lessons Learned	San Francisco Bay-Delta Aquatic Habitat Institute	1993	PDF	AHI
Keynote Address for AHI Workshop on TIE's Status of TIE's as a Regulatory Tool in S.F. Bay Region	Aquatic Habitat Institute	1993	PDF	AHI
Proceedings of a Workshop on Chronic Toxicity Identification Evaluations in the San Francisco Bay Region	Aquatic Habitat Institute	1992	PDF	AHI
Evaluation of Turbidity and Turbidity Related Effects on the Biota of the San Francisco Bay-Delta Estuary	O'Connor, J. M.	1991	PDF	AHI
Status And Trends Report On Pollutants In The San Francisco Estuary	San Francisco Bay-Delta Aquatic Habitat Institute	1991	PDF	AHI
San Francisco Estuary Project Status and Trends Report on Pollutants in the San Francisco Estuary, Final Draft	Davis, J. A.; Gunther, A.; Richardson, B. J.; O'Connor, J.; Spies, R. B.; Wyatt, E.; Larson, E.; Meiorin, E. C.	1991	PDF	AHI
Estuarine Data Index: A Guide to Bay-Delta Research and Monitoring Programs, Volume 2	Aquatic Habitat Institute	1990	PDF	AHI
Estuarine Data Index: A Guide to Bay-Delta Research and Monitoring Programs, Volume I	Aquatic Habitat Institute	1990	PDF	AHI
Inventory of Monitoring Programs in the San Francisco Bay and Delta	Kramer, K. S.	1989	PDF	AHI
Monitoring of Toxic Contaminants in the San Francisco Bay-Delta: A Critical Review, Emphasizing Spatial and Temporal Trend Monitoring	Phillips, D. J. H.	1988	PDF	AHI
A Survey of User Needs for Data Relating to Environmental and Water Quality in the San Francisco Estuary	Kramer, K. S.; Phillips, J. H.	1988	PDF	AHI
Inventory of Priority Datasets Relating to the San Francisco Estuary	Davis, J. A.	1988	PDF	AHI
Toxic Contaminants in the San Francisco Bay-Delta and their Possible Biological Effects	Phillips, D. J. H.	1987	PDF	AHI
An Assessment of The Loading of Toxic Contaminants to The San Francisco-Bay Delta: Executive Summary	Gunther, A.; Davis, J. A.; Phillips, D. J. H.	1987	PDF	AHI
An Assessment of The Loading of Toxic Contaminants to The San Francisco-Bay Delta: Full Report	Gunther, A.; Davis, J. A.; Phillips, D. J. H.	1987	PDF	AHI

Aquatic Pesticide Monitoring Program reports

Title	Author	Year	Link	SFEI Program
Assessment of Potential Aquatic Herbicide Impacts to California Aquatic Ecosystems.	Siemering, G.; Hayworth, J. D.; Greenfield, B. K.	2008	PDF	CMR APMP
Hg L 3 XANES study of mercury methylation in shredded Eichhornia crassipes	Rajan, M.; Darrow, J.; Hua, M.; Barnett, B.; Mendoza, M.; Greenfield, B. K.; Andrews, J. C.	2008	PDF	CMR APMP
Mechanical shredding of water hyacinth (Eichhornia crassipes): Impacts to water quality in the Sacramento-San Joaquin River Delta, California	Greenfield, B. K.; Siemering, G.; Andrews, J. C.; Rajan, M.; Andrews Jr., S. P.; Spencer, D. F.	2007	PDF	APMP CMR
Evaluation of water hyacinth survival and growth in the Sacramento Delta, California following cutting	Spencer, D. F.; Ksander, G. G.; Donovan, M. J.; Liow, P. S.; Chan, W. K.; Greenfield, B. K.; Shonkoff, S. B.; Andrews, S. P.	2006	PDF	CMR APMP
Control costs, operation, and permitting issues for non-chemical plant control: case studies in the San Francisco Bay-Delta Region, California.	Greenfield, B. K.; Blankinship, M.; McNabb, T. P.	2006	PDF	APMP
Evaluating impacts of Lake Maid plant control	David, N.; Greenfield, B. K.; Siemering, G. S.	2006	PDF	APMP
Aquatic Pesticides Monitoring Program Monitoring Project Final Report	Siemering, G.	2005	PDF	APMP
Aquatic Pesticides Monitoring Program Phase 3 (2005) Bioassessment of Waterbodies Treated With Aquatic Pesticides	Hayworth, J.; Melwani, A. R.	2005	PDF	APMP
Aquatic Pesticides Monitoring Program Nonchemical Alternatives Year 3 Final Report	Greenfield, B. K.; David, N.; Siemering, G.; McNabb, T. P.; Spencer, D. F.; Ksander, G. G.; Donovan, M. J.; Liow, P. S.; Chan, W. K.; Shonkoff, S. B.; Andrews, S.; Howard, V.; Sytsma, M.	2005	PDF	APMP
Aquatic Pesticides Monitoring Program Quality Assurance Program Plan	Yee, D.; Siemering, G.; Hayworth, J.; Oros, D. R.; Lowe, S.; Davis, J. A.	2004	PDF	APMP
Aquatic Pesticides Monitoring Program Phase 3 (2004) Monitoring Project Report	Siemering, G.; Hayworth, J.; Melwani, A. R.; Crane, D.; Mekebri, A.; Blondina, G.; Schlenk, D.; Xie, L.; Irwin, M. A.; Berry, K.; Greenfield, B. K.; Thrippleton, K.	2004	PDF	APMP
Aquatic Pesticides Monitoring Program Phase 2 (2003) Monitoring Project Report	Siemering, G.	2004	PDF	APMP
Field Evaluations of Alternative Pest Control Methods in California Waters	San Francisco Estuary Institute (SFEI); Blankinship and Associates; Marin Municipal Water District; Reclamation District 999; and Contra Costa County Public Works Department; Greenfield, B.K.	2004	PDF	APMP
Determining Economic Impacts of Aquatic Plant Management in California Waters	Mann, R.; Wittmann, M.	2004	PDF	APMP
Field Evaluations of Alternative Pest Control Methods in California Waters	San Francisco Estuary Institute; Blankinship and Associates; Marin Municipal Water District; Reclamation District 999; Contra Costa County Public Works Department	2004	PDF	APMP
Does shredding water hyacinths affect mercury speciation?	Hua, M.; Rajan, M.; Hackett, A.; Darrow, J.; Andrews, J. C.; Greenfield, B. K.	2004		APMP CMR
Phase 2 (2003) Bioassessment of Waterbodies Treated with Aquatic Pesticides	Hayworth, J.; David, N.; Shonkoff, S. B.	2004	PDF	APMP
A Proposed Lentic Benthic Bioassessment Procedure for California (Protocol Brief for Biological Sampling in Lakes, Reservoirs, and Ponds)	Hayworth, J.	2004	PDF	APMP
Review of Alternative Aquatic Pest Control Methods For California Waters	Greenfield, B. K.; David, N.; Hunt, J.; Wittmann, M.; Siemering, G.	2004	PDF	APMP CMR
Review of Alternative Aquatic Pest Control Methods For California Waters	Greenfield, B. K.; David, N.; Hunt, J.; Wittmann, M.; Siemering, G.	2004	PDF	APMP
Review of Alternative Aquatic Pest Control For California Waters	Greenfield, B. K.; David, N.; Hunt, J.; Wittmann, M.; Siemering, G.	2004	PDF	APMP
APMP Alternatives Program Executive Summary	Greenfield, B. K.	2004	PDF	APMP CMR
Aquatic Pesticides Alternatives Executive Summary	Greenfield, B. K.	2004	PDF	APMP
APMP Alternatives Program Executive Summary	Greenfield, B. K.	2004	PDF	APMP
UC Santa Barbara Graduate Project Report: "A Cost and Environmental Analysis of Aquatic Plant Management in California"	Frieman, G. M.; Lehman, G. V.; Quinn, J. D.; Wittmann, M. E.	2004	PDF HTML	APMP
Aquatic Pesticides Alternatives Literature Review, Review of Alternative Aquatic Pest Control Methods For California Waters	David, N.; Greenfield, B. K.; Hunt, J.; Siemering, G.; Wittmann, M.	2004	PDF	APMP
Aquatic Pesticides Alternatives Demonstration Project Report	Blankinship and Associates, Davis, CA; Contra Costa County Public Works Department, Martinez, CA; Marin Municipal Water District, Corte Madera, CA; Reclamation District 999, Clarksburg, CA; San Francisco Estuary Institute	2004	PDF	APMP
Aquatic Pesticide Monitoring Program Modeling Workgroup Final Report	Wadley, A.; Hunt, J.; Young, T.; Malamud-Roam, K.; Oros, D.	2003	PDF	APMP
Aquatic Pesticide Monitoring Program Literature Review	Siemering, G.; David, N.; Hayworth, J.; Franz, A.; Malamud-Roam, F.	2003	PDF	APMP
A new research program on non-chemical pest control in California waters	Greenfield, B. K.; David, N.; Siemering, G.	2003		APMP CMR
Non-Chemical Aquatic Plant Control (presented at NorCAl SETAC 2003 Conference)	David, N.; Greenfield, B. K.; Siemering, G.	2003	PPT	APMP

Biological Invasions reports

Title	Author	Year	Link	SFEI Program
Exotic Oyster Survey, Removal and Research in San Francisco Bay: Annual Progress Report	Cohen, A. N.; Weinstein, A.	2008	PDF	BI
Preventing the introduction of non-native species with imported oyster shell used for cultch in restoration projects: an inspection, and consideration of future protocols	Cohen, A. N.; Zabin, C. J.	2007	PDF	BI
California's Response to the Zebra/Quagga Mussel Invasion in the West. Recommendations of the California Science Advisory Panel, for the California Incident Command (California Department of Fish and Game, California Department of Water Resources, U.S. Fish and Wildlife Service, California Department of Food and Agriculture, and California Department of Boating and Waterways)	Cohen, A. N.; Moll, R.; Carlton, J. T.; O'Neil, Jr.,C. R.; Anderson, L.; Moyle, P. B.	2007	PDF	BI
Shellfish Beds in Report on the Subtidal Habitats and Associated Biological Taxa in San Francisco Bay	Cohen, A. N.; Cosentino-Manning, N.; Schaeffer, K.	2007	Link	BI
Potential Distribution of Zebra Mussels (Dreissena polymorpha) and Quagga Mussels (Dreissena bugensis) in California Phase 1 Report. A Report for the California Department of Fish and Game	Cohen, A. N.	2007	PDF	BI
Tanaidacea in The Light & Smith Manual: Intertidal Invertebrates of the California and Oregon Coast.	Cohen, A. N.; J.T. Carlton	2007	HTML	BI
Introduced Marine and Estuarine Invertebrates	Carlton, J. T.; Cohen, A. N.; J.T. Carlton	2007	HTML	BI
Phytoplankton and bacterial assemblages in ballast water of U.S. military ships as a function of port of origin, voyage time, and ocean exchange practices.	Burkholder, J. M.; Hallegraeff, G. M.; Melia, G.; Cohen, A. N.; Bowers, H. A.; Oldach, D. W.; Parrowa, M. W.; Sullivan, M. J.; Zimba, P. V.; Allen, E. H.; Mallin, M. A.	2007	PDF	BI
The colonial ascidian Didemnum sp. A: Current distribution, basic biology, and potential threat to marine communities of the northeast and west coasts of North America	Bullard, S. G.; Lambert, G.; Carman, M. R.; Byrnes, J.; Whitlatch, R. B.; Ruiz, G.; Miller, R. J.; Harris, L.; Valentine, P. C.; Collie, J. S.; Pederson, J.; McNaught, D. C.; Cohen, A. N.; Asch, R. G.; Dijkstra, J.; Heinonen, K.	2007	PDF	BI
Environmental threats to tidal marsh vertebrates of the San Francisco Bay Estuary	Takekawa, J. Y.; Woo, I.; Spautz, H.; Nur, N.; Grenier, J. L.; Malamud-Roam, K.; Nordby, J. C.; Cohen, A. N.; Malamud-Roam, F.; Wainwright-De La Cruz, S. E.	2006	PDF	BI WL
Bridging Divides: Maritime Canals as Invasion Corridors	Gollasch, S.; Galil, B. S.; Cohen, A. N.	2006	Link	BI
Inspection for Live Marine Invertebrates in an Oyster Shell Pile at Drakes Bay Oyster Company	Cohen, A. N.; Zabin, C. J.	2006	PDF	BI
The Panama Canal: Species Introductions and the Panama Canal	Cohen, A. N.; Gollasch, S.; Galil, B.S.; Cohen, A.N.	2006	Link	BI
The Panama Canal: Cutting a canal through Central America	Cohen, A. N.; S. Gollasch; B.S. Galil; A.N. Cohen	2006	Link	BI
Ballast Water Discharge Standards: Report and Recommendation of the California Advisory Panel on Ballast Water Performance Standards.	Holmes, M.; Bolland, D.; Cohen, A. N.; Fox, A.; Herod, J.; Jennings, W.; Moore, S.; Newkirk, S.; Ruiz, G.; Simkanin, C.; Talley, D.; Ward, K.	2005	PDF	BI
Rapid Assessment Survey for Exotic Organisms in Southern California Bays and Harbors, and Abundance in Port and Non-port Areas	Cohen, A. N.; Harris, L.; Bingham, B.; Carlton, J.; Chapman, J.; Lambert, C.; Lambert, G.; Ljubenkov, J. C.; Murray, S. N.; Rao, L. C.; Reardon, K.; Schwindt, E.	2005	PDF	BI
Rapid Assessment Channel Survey for Exotic Species in San Francisco Bay - November 2005	Cohen, A. N.; Chapman, J. W.	2005	PDF	BI
Rapid Assessment Shore Survey for Exotic Species in San Francisco Bay - May 2004	Cohen, A. N.; Calder, D. R.; Carlton, J. T.; Chapman, J. W.; Harris, L. H.; Kitayama, T.; Lambert, C.C.; Lambert, G.; Piotrowski, C.; Shouse, M.; Sol�rzano, L. A.	2005	PDF	BI
Overview of 2004/05 Rapid Assessment Shore and Channel Surveys for Exotic Species in San Francisco Bay	Cohen, A. N.	2005	PDF	BI
A review of Zebra Mussels' Environmental Requirements	Cohen, A. N.; CA Department of Water Resources	2005	PDF	BI
Summary of data and analyses indicating that exotic species have impaired the beneficial uses of certain California waters	Cohen, A. N.; Moyle, P. B.	2004	PDF	BI
An Exotic Species Detection Program for the Lower Columbia River Estuary	Cohen, A. N.	2004	PDF	BI
An Exotic Species Detection Program for Puget Sound	Cohen, A. N.	2004	PDF	BI
An Exotic Species Detection Program for Tillamook Bay	Cohen, A. N.	2004	PDF	BI
Invasions in the sea	Cohen, A. N.	2004	PDF	BI
Practical Guidebook to the Control of Invasive Aquatic and Wetland Plants of the San Francisco Bay - Delta Region	May, M.; Grosso, C. S.; Collins, J. N.	2003	HTML	BI
On Mitten Crabs and Lung Flukes	Cohen, A. N.	2003	PDF	BI
Episodic global dispersal in shallow water marine organisms: The case history of the European shore crabs Carcinus maenas and Carcinus aestuarii	Carlton, J.; Cohen, A. N.	2003	PDF	BI
Asian Kelp Undaria pinnatifida in the northeastern Pacific Ocean	Silva, P.; Woodlield, R.; Cohen, A. N.; Harris, L. H.; Goddard, J.	2002	PDF	BI
Invasion of San Francisco Bay by Smooth Cordgrass, Spartina alterniflora: A Forecast of Geomorphic Effects on the Intertidal Zone	Collins, J. N.	2002	PDF	BI
Project Report for the Southern California Exotics Expedition 2000 A Rapid Assessment Survey of Exotic Species in Sheltered Coastal Waters	Cohen, A. N.; Harris, L. H.; Bingham, B. L.; Carlton, J. T.; Chapman, J. W.; Lambert, C. C.; Lambert, G.; Ljubenkov, J. C.; Murray, S. N.; Rao, L. C.; Reardon, K.; Schwindt, E.	2002	PDF	BI
Success factors in the establishment of human-dispersed organisms	Cohen, A. N.; J M Bullock; R E Kenward; R S Hails	2002	PDF	BI
The release of pest species by marine aquaculture: lessons from a South African parasite introduced into California waters	Cohen, A. N.; A.N. Cohen; S.K. Webb	2002	PDF	BI
Final Draft Master List of NIS Plant Species	Collins, J. N.	2001	PDF	BI
Investigations into the Introduction of Non-indigenous Marine Organisms via the Cross-Continental Trade in Marine Baitworms	Cohen, A. N.; Weinstein, A.; Emmett, M. A.; Lau, W.; Carlton, J.	2001	PDF	BI
Zebra Mussel's Calcium Threshold and Implications for its Potential Distribution in North America	Cohen, A. N.; Weinstein, A.	2001	PDF	BI
The Potential Distribution of Chinese Mitten Crabs (Eriocheir sinensis) in selected waters of the Western United States with U.S. Bureau of Reclamation Facilities	Cohen, A.N.; Weinstein, A.	2001	PDF	BI
Report of the Washington State Exotics Expedition 2000	Cohen, A. N.; Berry, H.; Mills, C.; Milne, D.; Britton-Simmons, K.; Wonham, M.; Secord, D.; Barkas, J. A.; Bingham, B.; Bookheim, B.; Byers, J.; Chapman, J. W.; Cordell, J.; Dumbauld, B.; Fukuyama, A.; Harris, L. H.; Kohn, A.; Li, K.; Mumford, T.; Radashevsky, V.; Sewell, A.; Welch, K.	2001	PDF	BI
An Introduction to the San Francisco Estuary	Cohen, A. N.	2001	PDF	BI
Invasion by a Japanese marine microorganism in western North America	McGann, M.; Sloan, D.; Cohen, A. N.	2000	PDF	BI
The regulation of biological pollution: Preventing exotic species invasions from ballast water discharged into California coastal waters	Cohen, A. N.; Foster, B.	2000	PDF	BI
The 1998 Puget Sound Expedition: a rapid assessment survey for nonindigenous species in the shallow waters of Puget Sound	Mills, C. E.; Cohen, A. N.; Berry, H.; Wonham, M.; Bingham, B.; Bookheim, B.; Carlton, J. T.; Chapman, J. W.; Cordell, J. R.; Harris, L. H.; Klinger, T.; Kohn, A.; Lambert, C. C.; Lambert, G.; Li, K.; Secord, D.; Toft, J.	1999	PDF	BI
Extent and impacts of ballast water invasions	Cohen, A. N.	1999	PDF	BI
Briefing Paper on a Monitoring Plan for Nonindigenous Organisms in the San Francisco Bay/Delta Estuary	Cohen, A. N.	1999	PDF	BI
Invasions status and policy on the U. S. west coast	Cohen, A. N.	1999	PDF	BI
Combating Bio-Invaders (radio program). NPR's Living on Earth (11-12-99)	Cohen, A. N.	1999	HTML	BI
The potential distribution and abundance of zebra mussels in California	Weinstein, A.; Cohen, A. N.	1998	PDF	BI
Introduced Tidal Marsh Plants in the San Francisco Estuary: Regional Distribution and Priorities for Control	Grossinger, R. M.; Alexander, J.; Cohen, A. N.; Collins, J. T.	1998	PDF	BI
The Potential Distribution and Abundance of Zebra Mussels in California	Cohen, A. N.; Weinstein, A.	1998	PDF	BI
Methods and Data for Analysis of Potential Distribution and Abundance of Zebra Mussels in California	Cohen, A. N.; Weinstein, A.	1998	PDF	BI
Biological Invasions in Aquatic Ecosystems: Impacts on Restoration and Potential for Control	Cohen, A. N.; Webb, S. K.	1998	PDF	BI
A Rapid Assessment Survey of Nonindigenous Species in the Shallow Waters of Puget Sound	Cohen, A. N.; Mills, C.; Berry, H.; Wonham, M.; Bingham, B.; Bookheim, B.; Carlton, J.; Chapman, J.; Cordell, J.; Harris, L.; Klinger, T.; Kohn, A.; Lambert, C. C.; Lambert, G.; Li, K.; Secord, D.; Toft, J.	1998	PDF	BI
Accelerating invasion rate in a highly invaded estuary	Cohen, A. N.; Carlton, J. T.	1998	PDF	BI
Petition to list the seaweed Caulerpa taxifolia as a prohibited species under the Federal Noxious Weed Act	Cohen, A. N.; et al.; Bruce Babbit	1998	PDF	BI
The invasion of the Pacific Coast by the European green crab Carcinus maenas	Cohen, A. N.; Cassell, J. L.; Olin, P. G.	1998	PDF	BI
Biological invasions and opportunities for their regulation on the west coast of the United States.	Cohen, A. N.; Cassell, J. L.; Olin, P. G.	1998	PDF	BI
Monitoring for Non-indigenous Organisms	Cohen, A. N.	1998	PDF	BI
The exotic species threat to California's coastal resources	Cohen, A. N.	1998	PDF	BI
Ships' Ballast Water and the Introduction of Exotic Organisms into the San Francisco Estuary: Current Status of the Problem and Options for Management	Cohen, A. N.	1998	PDF	BI
Exotic organisms; California's Emerging Environmental Challenges	Cohen, A. N.	1998	PDF	BI
Invasive Species in San Francisco Bay (radio program). NPR's Science Friday (1-23-98)	Cohen, A. N.	1998	HTML	BI
Periwinkle's progress: the Atlantic snail Littorina saxatilis (Mollusca: Gastropoda) establishes a colony on a Pacific shore	Carlton, J.; Cohen, A. N.	1998	PDF	BI
Biological Warfare. MetroNews (5-1-97)	Weir, C.	1997	HTML	BI
Transoceanic transport mechanisms: The introduction of the Chinese mitten crab Eriocheir sinensis to California	Cohen, A. N.; Carlton, J.	1997	PDF	BI
Urging Action to control an abalone parasite and prevent other introductions via aquaculture activities.	Cohen, A. N.; et al.; Pete Wilson	1997	PDF	BI
Biological invasions in the estuary	Cohen, A. N.	1997	PDF	BI
Have claw, will travel	Cohen, A. N.	1997	PDF	BI
The invasion of the estuaries	Cohen, A. N.; Patten, K	1997	PDF	BI
Introduction, dispersal and potential impacts of the green crab Carcinus maenas in San Francisco Bay	Cohen, A. N.; Carlton, J. T.; Fountain, M. C.	1995	PDF	BI
Intruders in the estuary	Cohen, A. N.; Carlton, J. T.	1995	PDF	BI
Chinese mitten crabs in North America	Cohen, A. N.	1995	PDF	BI
Biological Study Nonindigenous Aquatic Species in a United States Estuary: A Case Study of the Biological Invasions of the San Francisco Bay and Delta	Carlton, J.; Cohen, A. N.	1995	HTML	BI
Place Invaders	Cohen, A. N.	1993	PDF	BI
Weeding the garden	Cohen, A. N.	1992	PDF	BI

Contaminant Monitoring and Research reports

Title	Author	Year	Link	SFEI Program
Estimated Sediment Contaminant Concentrations Associated with Biological Impacts at San Diego Bay Cleanup Sites	Thompson, B.; Melwani, A. R.; Hunt, J. A.	2009	PDF	CMR
Calibration and evaluation of five indicators of benthic community condition in two California bay and estuary habitats	Ranasinghe, J. A.; Weisberg, S. B.; Smith, R. W.; Montagne, D. E.; Thompson, B.; Oakden, J. M.; Huff, D. D.; Cadien, D. B.; Velarde, R.G.; Ritter, K. J.	2009	Link PDF	CMR
Spatial trends and impairment assessment of mercury in sport fish in the Sacramento-San Joaquin Delta Watershed	Melwani, A. R.; Bezalel, S. N.; Hunt, J. A.; Grenier, J. L.; Ichikawa, G.; Heim, W.; Bonnema, A.; Foe, C.; Slotton, D. G.; Davis, J. A.	2009	PDF	CMR
The level of agreement among experts applying best professional judgment to assess the condition of benthic infaunal communities	Weisberg, S. B.; Thompson, B.; Ranasinghe, J. A.; Montagne, D. E.; Cadien, D. B.; Dauer, D. M.; Diener, D.; Oliver, J.; Reish, D. J.; Velarde, R. G.; Word, J. Q.	2008	PDF	CMR RMP
The UC Davis Biosentinel Mercury Program: Using Small Fish to Monitor Fine-scale Patterns of Methylmercury Contamination in the Watershed	Slotten, D.; Davis, J. A.	2008	PDF	CMR
Assessment of Potential Aquatic Herbicide Impacts to California Aquatic Ecosystems.	Siemering, G.; Hayworth, J. D.; Greenfield, B. K.	2008	PDF	CMR APMP
Hg L 3 XANES study of mercury methylation in shredded Eichhornia crassipes	Rajan, M.; Darrow, J.; Hua, M.; Barnett, B.; Mendoza, M.; Greenfield, B. K.; Andrews, J. C.	2008	PDF	CMR APMP
Sampling in the Freshwater Reaches of the Lower Delta for the Sediment Quality Objectives Measures. UPDATED for CALFED meeting Oct 2008	Lowe, S.; Salop, P.; Gehrts, K.; Anderson, B.; Phillips, B. M.; Bay, S.	2008	PDF	CMR
Sampling in the Freshwater Reaches of the Lower Delta for the Sediment Quality Objectives Measures	Lowe, S.; Salop, P.; Gehrts, K.; Anderson, B.; Phillips, B. M.; Bay, S.	2008	PDF	CMR
Effects of Short-term Water Quality Impacts Due to Dredging and Disposal on Sensitive Fish Species in San Francisco Bay	Jabusch, T. W.; Melwani, A. R.; Ridolfi, K.; Connor, M.	2008	PDF	CMR
Science Support for the Surface Water Ambient Monitoring Program, SWRCB Agreement No. 03-200-250-0	Hoenicke, R.; Lowe, S.; Davis, J. A.	2008	PDF	CMR
Modeling mercury accumulation in largemouth bass	Greenfield, B. K.; Lent, M. A.; Slotton, D. G.; Ayers, S. M.	2008	PDF	CMR
Bioaccumulation Of Pollutants In California Waters: A Review Of Historic Data And Assessment Of Impacts On Fishing And Aquatic Life	Davis, J.A.; Grenier, J. L.; Melwani, A. R.; Bezalel, S. N.; Letteney, E. M.; Zhang, E. J.; Odaya, M.	2008	Link Link	CMR
Mercury in sport fish from the Sacramento-San Joaquin Delta region, California	Davis, J. A.; Greenfield, B. K.; Ichikawa, G.; Stephenson, M.	2008	PDF	CMR
SWAMP Fact Sheet: Long-Term Monitoring of Pollutants in Fish and Mussels Documents Major Improvements and Persistent Problems	Davis, J. A.	2008	PDF	CMR
Recommendations for a Bioaccumulation Monitoring and Human Health Risk Reduction Program for California	Davis, J. A.	2008	PDF	CMR
Grassland Bypass Project Report 2004-2005	Grassland Bypass Project Oversight Committee	2008	PDF	CMR
Indicators of Anthropogenic Contamination in the Estuary	Thompson, B.; Melwani, A. R.; Lowe, S.; Greenfield, B. K.; Robinson, A.	2007	PDF	CMR
The Relationship between Landscape Features and Sport Fish Mercury in the Sacramento-San Joaquin Delta Watershed	Melwani, A. R.; Bezalel, S. N.; Grenier, L. G.; Hunt, J. A.; Robinson, A. H.; Davis, J. A.	2007	PDF	CMR
California Bay-Delta Authority Fish Mercury Project, Year 2 (2006) Annual Report. Sport Fish Sampling and Analysis	Melwani, A. R.; Bezalel, S.; Hunt, J. A.; Grenier, J. L.; Hunt, J. A.; Robinson, A. H; Davis, J.	2007	PDF	CMR
Final Project Report: Investigations of Sources and Effects of Pyrethroid Pesticides in Watersheds of the San Francisco Estuary	Lowe, S.; Anderson, B.; Phillips, B.	2007	PDF	CMR
Quality Assurance Project Plan: Investigations of Sources and Effects of Pyrethroid Pesticides in Watersheds of the San Francisco Bay Estuary	Lowe, S.; Anderson, B.	2007	PDF	CMR
Modeling mercury bioaccumulation in largemouth bass in the Sacramento-San Joaquin River Delta and tributaries	Greenfield, B. K.; Slotton, D. G; Ayers, S. M.	2007	PDF	CMR
Mechanical shredding of water hyacinth (Eichhornia crassipes): Impacts to water quality in the Sacramento-San Joaquin River Delta, California	Greenfield, B. K.; Siemering, G.; Andrews, J. C.; Rajan, M.; Andrews Jr., S. P.; Spencer, D. F.	2007	PDF	APMP CMR
Quantitative Determination of Pyrethroids, Pyrethrins, and Piperonyl Butoxide in Surface Water by High Resolution Gas Chromatography/High Resolution Mass Spectrometry	Woudneh, M.; Oros, D. R.	2006	PDF	CMR
Pyrethroids, Pyrethrins, and Piperonyl Butoxide in Sediments by High Resolution Gas Chromatography/High Resolution Mass Spectrometry	Woudneh, M.; Oros, D. R.	2006	PDF	CMR
Evaluation of water hyacinth survival and growth in the Sacramento Delta, California following cutting	Spencer, D. F.; Ksander, G. G.; Donovan, M. J.; Liow, P. S.; Chan, W. K.; Greenfield, B. K.; Shonkoff, S. B.; Andrews, S. P.	2006	PDF	CMR APMP
Technical Report for the Interagency Ecological Program (IEP) Pelagic Organism Decline (POD) Workgroup: Tier 1 Risk Assessment of California Department of Boating and Waterways Aquatic Herbicide Use in the Sacramento-San Joaquin River Delta.	Siemering, G.	2006	PDF	CMR
Microbial degradation of penoxsulam in flooded rice field soils	Jabusch, T. W.; Tjeerdema, R. S.	2006	HTML	CMR
Water Quality Improvements are Critical to Waterfront Devleopment: Lessons from Boston, San Francisco and Kitakyushu	Connor, M.	2006	PDF	CMR
Castro Valley Atmospheric Deposition Study	Yee, D.; Franz, A.	2005	PDF	CMR
Aquatics Herbicides: Overview of Usage, Fate and Transport, Potential Environmental Risk, and Future Recommendations for the Sacramento-San Joaquin Delta and Central Valley	Siemering, G.; Hayworth, J.	2005	PDF	CMR
Pyrethroid Insecticides: An Analysis of Use Patterns, Distributions, Potential Toxicity and Fate in the Sacramento-San Joaquin Delta and Central Valley	Oros, D.; Werner, I.	2005	PDF	CMR
Dissipation of penoxsulam, a new sulfonamide herbicide, in simulated rice field conditions	Jabusch, T. W.; Tjeerdema, R. S.	2005	PDF	CMR
San Francisco Environmental Indicators Workshop (January 26, 2005): Summary Report	San Francisco Estuary Institute	2005	PDF	CMR
Control of Agricultural Drainage Water and Restoration of Wetland Water Supply Channels	David, N.; Eacock, C.; McGahan, J.; Beckon, W.	2005	PDF	CMR
Water Quality Improvements Are Critical to Waterfront Development: Lessons from Boston, San Francisco and Kitakyushu	Connor, M.	2005	PDF	CMR
Grassland Bypass Project Report 2003	Grassland Bypass Project Oversight Committee	2005	PDF	CMR
Assessment of macrobenthos resonse to sediment contamination in the San Francisco Estuary, USA	Thompson, B. E.; Lowe, S.	2004	PDF	CMR
Assessment of Macrobenthos Response to Sediment Contamination in the San Francisco Estuary (published in Environmental Toxicology and Chemistry)	Thompson, B.; Lowe, S.	2004	Link	CMR
Development of Environmental Indicators of the Condition of San Francisco Estuary	Thompson, B.; Gunther, A.	2004	PDF	CMR
Evaluation of Benthic Assessment Methodology in Southern California Bays and San Francisco Bay	Ranasinghe, J. A.; Thompson, B.; Smith, R.; Lowe, S.	2004	PDF	CMR
Does shredding water hyacinths affect mercury speciation?	Hua, M.; Rajan, M.; Hackett, A.; Darrow, J.; Andrews, J. C.; Greenfield, B. K.	2004		APMP CMR
Monitoring Trace Organic Contamination in Central Valley Fish: Current Data and Future Steps.	Greenfield, B. K.; Wittner, E.; David, N.; Shonkoff, S. B.; Davis, J. A.	2004	PDF	CMR
Review of Alternative Aquatic Pest Control Methods For California Waters	Greenfield, B. K.; David, N.; Hunt, J.; Wittmann, M.; Siemering, G.	2004	PDF	APMP CMR
APMP Alternatives Program Executive Summary	Greenfield, B. K.	2004	PDF	APMP CMR
Fish mercury in the Bay-Delta watershed: a dark cloud with a silver lining	Davis, J. A.; Greenfield, B. K.; Ichikawa, G.; Stephenson, M.	2004		CMR
Sport fish contamination in the Bay-Delta watershed	Davis, J. A.; Greenfield, B. K.	2004		CMR
Dioxins in San Francisco Bay: Conceptual Model/Impairment Assessment	Connor, M.; Yee, D.; Davis, J. A.; Werme, C.	2004	PDF	CMR
Legacy Pesticides in San Francisco Bay Conceptual Model/Impairment Assessment	Connor, M.; Davis, J. A.; Leatherbarrow, J.; Werme, C.	2004	PDF	CMR
CISNet San Pablo Bay Network of Environmental Stress Indicators; Benthic Microfauna.	Thompson, B.; Lowe, S.; Ross, J. R. M.	2003	HTML	CMR
Causes of Sediment Toxicity to Mytilus galloprovincialis in San Francisco Bay, California (link to abstract of article published in Archives of Environmental Contamination and Toxicology)	Phillips, B.; Anderson, B.; Hoenicke, R.; Hunt, J.; Lowe, S.; Phillips, B.; Thompson, B.; Tjeerdema, R.	2003	Link	CMR
Conceptual Modeling of the Major Factors Controlling the Sources, Fate, and Effects of Persistent Organic Pollutants in the Estuary	Connor, M.; Davis, J. A.; Leatherbarrow, J.; Yee, D.; Oros, D.; Ross, J. R. M.; Werme, C.	2003	PDF	CMR
A new research program on non-chemical pest control in California waters	Greenfield, B. K.; David, N.; Siemering, G.	2003		APMP CMR
Surveillance for Previously Unmonitored Organic Contaminants in the San Francisco Estuary (Poster)	Oros, D. R.	2003	PDF	CMR
The tidal marsh food web	Grenier, J. L.; Collins, J.; Davis, J. A.; Greenfield, B. K.	2002	PDF	CMR WL
South Bay/Fairfield-Suisun Trace Organic Contaminants in Effluent Study	Yee, D.; Leatherbarrow, J.; Davis, J. A.; Prepared for the San Jose/Santa Clara Water Pollution Control Plant, Sunnyvale Water Pollution Control Plant, Palo Alto Water Quality Control Plant, and Fairfield-Suisun Sewer District	2001	PDF	CMR
South Bay Trace Organic in Effluent Study Report	San Francisco Estuary Institute	2001	PDF	CMR
NorCal SEATAC 2001 - Seafood Contamination and Consumption	Davis, J. A.; Greenfield, B. K.; Roberts, C.; Fairey, R.; Ichicawa, G.; Stephenson, M.; Crane, D.	2001	PPT	CMR
Contaminant Loads from Stormwater to Coastal Waters in the San Francisco Bay Region: Comparison to Other Pathways and Recommended Approach for Future Evaluation	Davis, J. A.; McKee, L. J.; Leatherbarrow, J. E.; Daum, T.	2000	HTML PDF	CMR
Relationship Between Sediment Toxicity and Contamination in San Francisco Bay (Abstract)	Thompson, B.; Anderson, B.; Hunt, J.; Taberski, K.; Phillips, B.	1999	HTML	CMR
Relationship Between Sediment Toxicity and Contamination in San Francisco Bay	Thompson, B.; Anderson, B.; Hunt, J.; Taberski, K.; Phillips, B.	1997	HTML	CMR
Bioaccumulation of Contaminants by Transplanted Bivalves in the San Francisco Estuary: Status and Trends	Davis, J. A.; Haskins, J.; Hoenicke, R.; Thompson, B.	1996	HTML	CMR
The Bioavailability of Toxic Contaminants in the San Francisco Bay-Delta - Proceedings of a Two Day Seminar Series	Gunther, A. J.; San Francisco Estuary Institute; AHI	1989	PDF	CMR

Historical Ecology Program reports

Title	Author	Year	Link	SFEI Program
Shifting Baselines in a California Oak Savanna: Nineteenth Century Data to Inform Restoration Scenarios.	Whipple, A. A.; Grossinger, R. M.; Davis, F. W.	In Press	PDF	HEP
Historical Ecology of Lower San Francisquito Creek Phase 1	Hermstad, D.; Cayce, K.; Grossinger, R. M.	2009	PDF	HEP
Re-Oaking the Valleys: Bringing Native Trees Back into Californias Suburban Landscapes	Grossinger, R. M.; Whipple, A.	2009	PDF	HEP
Historical Ecology Informing Restoration in East Contra Costa County: Wetland Restoration Opportunities on a Tributary to Brushy Creek (Souza II Property)	Askevold, R.; Fateman, A.; Whipple, A.; Stanford, B.; Grossinger, R. M.; Kopchik, J.	2009	PDF	HEP
South Santa Clara Valley Historical Ecology Study, including Soap Lake, the Upper Pajaro River, and Llagas, Uvas-Carnadero, and Pacheco Creeks	Grossinger, R. M.; Beller, E. E.; Salomon, M.; Whipple, A.; Askevold, R. A.; Striplen. C. J.; Brewster, E.; Leidy, R. A.	2008	HTML HTML	HEP
The Historical Ecology of Napa Valley: An Introduction	Grossinger, R. M.; Beller, E. E.; Collins, J. N.; Gardner, S.	2008	PDF	HEP
Historical Ecology and Landscape Change of the San Gabriel River and Floodplain	Stein, E.; Dark, S.; Longcore, T.; Hall, N.; Beland, M.; Grossinger, R. M.; Casanova, J.; Sutula, M.	2007	PDF	HEP
Ecology, Assemblage Structure, DIstribution, and Status of Fishes in Streams Tributary to the San Francisco Estuary, California	Leidy, R. A.	2007	HTML	HEP WS
Historical landscape ecology of an urbanized California valley: wetlands and woodlands in the Santa Clara Valley	Grossinger, R. M.; Striplen, C. J.; Askevold, R. A.; Brewster, E.; Beller, E. E.	2007	PDF	HEP
Historical Ecology of South Santa Clara County: Preliminary Findings. A Technical Memorandum to the Santa Clara Valley Habitat Conservation Plan/Natural Community Conservation Plan	Grossinger, R. M.; Striplen. C. J.; Askevold, R. A.; Beller, E. E.; Salomon, M.	2007	PDF	HEP
Landscape History of the Trancas: Historical Ecology Reseach Summary for the Trancas Crossing Park and Napa River Trail	Grossinger, R. M.; Beller, E. E.	2007	PDF	HEP
Ecological Connections between Baylands and Uplands: Examples from Marin County	Collins, J.; Didonato, J.; Geupel, G.; Grenier, J. L.; Kucera, T.; Lidicker, B.; Rainey, B.; Rottenborn, S.	2007	PDF	WL HEP
The Historical Ecology of Contra Costa County: An Illustrated Preview and Guide	Beller, E. E.; Whipple, A.; Askevold, R. A.; Grossinger, R. M.	2007	PDF	HEP
Streams, Wetlands, and Woodlands in the Napa Valley: New Perspectives from Old Maps	Beller, E. E.; Grossinger, R. M.; Askevold, R. A.; Pearce, S.; Collins, J. N.; McKee, L. J.; Hoenicke, R.; Gardner, S.	2007	PDF	HEP
Coyote Creek Watershed Historical Ecology Study: Historical Conditions and Landscape Change in the Estern Santa Clara Valley, California	Grossinger, R. M.; Askevold, R. A.; Striplen. C. J.; Brewster, E.; Pearce, S.; Larned, K.; McKee, L. J.; Collins, J. N.	2006	HTML	HEP
Changing Delta Geometry and Ecology: The Effects of Historical Landscape Modification on Water Quality and Ecosystem Structure in Suisun Marsh and Delta	Grossinger, R. M.; Collins, J. N.; Enright, C.; Culberson, S.; Mueller-Solger, A.	2005	PDF	HEP
State of the Estuary 2005 Conference Abstract	Grossinger, R. M.; Askevold, R. A.; Richard, C.	2005	PDF	HEP
T-Sheet User Guide: Application of the Historical U.S. Coast Survey Maps to Environmental Management in the San Francisco Bay Area	Grossinger, R. M.; Askevold, R. A.; Collins, J. N.	2005	PDF	HEP
Baylands and Creeks of South San Francisco Bay	Grossinger, R. M.; Askevold, R. A.	2005	PDF	HEP
Documenting Local Landscape Change: The Bay Area Historical Ecology Project	Grossinger, R. M.; Egan, D.; Howell, E. A.	2005	HTML	HEP
Interpreting Historical Maps to Reconstruct Past Landscapes in the Santa Clara Valley	Askevold, R. A.	2005	PDF	HEP
Relative effects of fluvial processes and historical land use on channel morphology in three sub-basins, Napa River basin, California, USA	Pearce, S.; Grossinger, R. M.	2004	PDF	WS HEP
Wetland Habitat Changes in the Rodeo Lagoon Watershed, Golden Gate National Recreation Area, Marin County, CA	Striplen. C. J.; Grossinger, R. M.; Collins, J. N.	2004	PDF	HEP WL
Ecological, Geomorphic, and Land Use History of Sulphur Creek Watershed: A component of the watershed management plan for the Sulphur Creek watershed, Napa County, California.	Grossinger, R. M.; Striplen. C. J.; McKee, L. J.; Brewster, E.	2004	PDF	HEP WS
Ecological, Geomorphic, and Land Use History of Carneros Creek Watershed: A component of the watershed management plan for the Carneros Creek watershed, Napa County, California	Grossinger, R. M.; Striplen. C. J.; Brewster, E.; McKee, L. J.	2004	PDF	HEP WS
Once and Future Bay: Lessons from History for Revitalizing the Bay	Grossinger, R. M.; Baye, P.	2004	PDF	HEP
Geography Department Commencement Ceremonies, UC Berkeley, Keynote Address, May 2004: "Notes from Places Past and Future"	Grossinger, R. M.	2004	HTML PDF	HEP
Synthesis of Scientific Knowledge: for maintaining and improving functioning of the South Bay Ecosystem and Restoring Tidal Salt Marsh and Associated Habitats over the next 50 years at Pond and Pond-Complex Scales	Collins, J. N.; Grossinger, R. M.	2004	PDF	WL HEP
Landscape Change in the Napa River Watershed, 1800 - 2002: Implications for the Restoration of In - Stream, Floodplain, and Valley Floor Habitat	Grossinger, R. M.; Striplen. C. J.; Brewster, E.; Collins, L.	2003	PPT	HEP
Physical and Ecological Characteristics of the Historic Baylands of South San Francisco Bay (Poster for the 2003 State of the Estuary Conference)	Grossinger, R. M.; Collins, J. N.; Striplen. C. J.; Burns, T.; Brewster, E.; Richard, C.; Strode, E.	2003	PDF	HEP WL
Historical Ecology at SFEI: Presentation to the SFEI Board of Directors	Grossinger, R. M.	2003	PDF	HEP
A Geographic History of the San Lorenzo Creek Watershed: Landscape Patterns Underlying Human Activities (w / 8.5x11 or 11 x 17 map)	Grossinger, R. M.; Brewster, E.	2003	PDF PDF	HEP WS
Old Science, New Science: Incorporating Traditional Ecological Knowledge into Contemporary Management	Striplen, C. J.; DeWeerdt, S.	2002	PDF	HEP
Sonoma Valley Historical Ecology Project, Phase 1 Final Report	Grossinger, R. M.; Dawson, A.	2002	PDF	HEP
Assessing Ecological Potential in an Urbanized Coastal Ecosystem: Methods and Findings from Historical Research in the San Francisco Bay Area (Abstract for Southern California Wetlands Recovery Project Conference 2002)	Grossinger, R. M.	2002	PDF	HEP
Land Use Timeline for Crow Canyon and the San Lorenzo Creek Watershed	Brewster, E.; Grossinger, R. M.	2001	PDF	HEP WS
Resurrection (Article in New Scientist)	DeWeerdt, S.	2001	PDF	HEP
The Way It Was: Mythology, Memory, and Maps of the Early San Francisco Bay Area (Abstract for American Society for Environmental History Conference, March 2000)	Grossinger, R. M.	2000	PDF	HEP
Robert A. Leidy Fish Survey 1992-1998 Bay Area Stream Fishes	Leidy, R. A.	1999	PDF	HEP WS
What did this place used to look like, anyway? An Example of Historical Ecology Research from the San Francisco Bay Area, CA (Abstract for Society for Ecological Restoration Conference 1999)	Grossinger, R. M.; Brewster, E.; Collins, J. N.; Der, Z.	1999	PDF	HEP
The Environment of the East Bay Shoreline When Europeans First Arrived (Transcript)	Collins, J. N.	1999	PDF	HEP WL
EcoAtlas Baylands Maps	San Francisco Estuary Institute	1998	HTML	HEP WL

Regional Monitoring Program reports

Title	Author	Year	Link	SFEI Program
Managing Contaminants of Emerging Concern in California:Developing Processes for Prioritizing, Monitoring, and Determining Thresholds of Concern	California Ocean Protection Council; California Ocean Science Trust; National Water Research Institute; San Francisco Estuary Institute; Southern California Coastal Water Research Project; University of California, Irvine Urban Water Research Center	2009	PDF	RMP
Pharmaceuticals and Personal Care Products in Wastewater Treatment Plant Influent and Effluent and Surface Waters of Lower South San Francisco Bay	Harrold, K. H.; Yee, D.; Sedlak, M.; Klosterhaus, S.; Davis, J. A.; Woudneh, M.; Riley, P.	2009	PDF	RMP
A Legacy of Contaminants in SF Bay and Wetland Cores	Yee, D.; Hammond, D.; Heim, W.; Rattonetti, T.; van Bergen, S.	2009	PDF	RMP
Patterns in mercury and trace organic contamination of sport fish and sediments in San Francisco Bay compared to the offshore coast	Melwani, A.; Greenfield, B; Targgart, L.; Kellogg, M.	2009	PDF	RMP
Guadalupe Watershed Model Support Tool for Regional Hg and PCBs Management	Lent, M.; Oram, J. J.; McKee, L .J.	2009	PDF	RMP
Organophosphate Flame Retardants in San Francisco Bay Biosolids and Sediments	Klosterhaus, S.; David, E. F.; Stapleton, H. M.	2009	PDF	RMP
Characterization of Organophosphorus Chemicals in a PentaBDE Replacement Mixture and their Detection in Biosolids	Klosterhaus, S.	2009	PDF	RMP
RMP 2007 Annual Monitoring Results	San Francisco Estuary Institute	2009	PDF	RMP
Environmental Data Upload and Visualization Tools	Grosso, C.; Bezalel, S.; Oram, J. J.; Featherston, T.; Ross, J.; Sedlak, M.; Franz, A.; Lowe, S.; Yee, D.	2009	PDF	RMP
Mercury In Biosentinel Forage Fish In San Francisco Bay	Greenfield, B. K.; Jahn, A.	2009	PDF	RMP
The Pulse of the Estuary: Monitoring and Managing Water Quality in the San Francisco Bay	San Francisco Estuary Institute (SFEI)	2009	PDF	RMP
A Methylmercury Budget for San Francisco Bay	Yee, D.	2008	PPT	RMP
The level of agreement among experts applying best professional judgment to assess the condition of benthic infaunal communities	Weisberg, S. B.; Thompson, B.; Ranasinghe, J. A.; Montagne, D. E.; Cadien, D. B.; Dauer, D. M.; Diener, D.; Oliver, J.; Reish, D. J.; Velarde, R. G.; Word, J. Q.	2008	PDF	CMR RMP
Alternate and New Brominated Flame Retardants Detected in US House Dust	Stapleton, H.; Allen, J; Kelly, S.; Konstantinov, A.; Klosterhaus, S.; McClean, M.; Webster, T.	2008	HTML PDF	RMP
Perfluorinated Compounds in San Francisco Bay Harbor Seals	Sedlak, M.; Greig, D.; Grace, R.; Riley, P.	2008	PDF	RMP
A Mass Budget of Polybrominated Diphenyl Ethers in San Francisco Bay, CA.	Oram, J. J.; McKee, L. J.; Werme, C.; Connor, M. S.; Oros, D.; Rodigari, F.; Grace, R.	2008	PDF	RMP
Cool New Tools for Accessing RMP Data	Oram, J. J.	2008	PDF	RMP
The Influence of Chemical and Physical Factors on Macrobenthos in the San Francisco Estuary	Melwani, A. R.; Thompson, B.	2008	PDF	RMP
Power Analysis and Optimization of the RMP Status and Trends Program	Melwani, A. R.; Greenfield, B. K.; Jahn, A.; Oram, J. J.; Sedlak, M.; Davis, J. A.	2008	PDF	RMP
San Francisco Bay Mercury Loads: Scientific information development and management response. Harmonizing River Catchment and Estuary	McKee, L. J.; Yee, D.; Leatherbarrow, J. E.; David, N.; Gilbreath, A. N.; Mangarella, P.; Looker, R.	2008	Link	RMP
Advances in Understanding of Loads of Mercury and Other Pollutants to the Bay	McKee, L. J.	2008	PPT	RMP
Sediment Quality Assessments in the San Francisco Estuary	Lowe, S.; Thompson, B.	2008	PDF	RMP
RMP Sediment TIE Study 2007-2008: Using Toxicity Identification Evaluation (TIE) Methods to Investigate Causes of Sediment Toxicity to Amphipods	Lowe, S.	2008	PDF	RMP
The San Francisco Bay Water Board's Regulatory Approach and Information Needs	Looker, R.	2008	PPT	RMP
Guadalupe Watershed Model. Phase: 1 Hydrology Model	Lent, M. A.; Oram, J. J.; McKee, L. J.	2008	PDF	RMP
Characterization of the brominated chemicals in a PentaBDE replacement mixture and their detection in biosolids collected from two San Francisco Bay Area Waste water treatment plants	Klosterhaus, S.; Stapleton, H.; Konstantinov, A.	2008	PDF	RMP
RMP Food Web Analysis; Data Report on Gut Contents of Four Fish Species	Jahn, A.	2008	PDF	RMP
Pulse of the Estuary: Monitoring and Managing Water Quality in the San Francisco Estuary	San Francisco Estuary Institute	2008	HTML PDF	RMP
Contaminant Concentrations in Sport Fish from San Francisco Bay, 2006	Hunt, J. A.; Davis, J. A.; Greenfield, B. K.; Melwani, A. R.; Fairey, R.; Sigala, M.; Crane, D.; Regalado, K.; Bonnema, A.	2008	PDF	RMP
San Francisco Estuary National Water Quality Monitoring Network Pilot Study Report	Harrold, K. H.; Lowe, S.; Connor, M.; Williams, M.; Kerkering, H.; Farrarr, C.; Eagles-Smith, C	2008	PDF	RMP
Exchange and Integration of Monitoring Data to Address Management Questions at Multiple Scales	Grosso, C. S.; Ross, J. R. M.; Lowe, S.	2008	Link PDF	RMP
The RMP Mercury Strategy: Studies Underway	Greenfield, B. K.	2008	PPT	RMP
Dredging and Sediment Management in San Francisco Bay	Goldbeck, S.	2008	PPT	RMP
Water Quality Science and Management in the Delaware Estuary	Fikslin, T.	2008	PPT	RMP
Synthesis of long-term nickel monitoring in San Francisco Bay	Yee, D.; Grieb, T.; Mills, W.; Sedlak, M.	2007	PDF	RMP
Biological Effects of Anthropogenic Contaminants in the San Francisco Estuary	Thompson, B.; Adelsbach, T.; Brown, C.; Hunt, J.; Kuwabara, J.; Neale, J.; Ohlendorf, H.; Schwarzbach, S.; Spies, R. M.; Taberski, K. M.	2007	PDF	RMP
Perfluorinated Compounds in San Francisco Bay Harbor Seals	Sedlak, M.; Greig, D.; Grace, R.; Riley, P.	2007	PDF	RMP
Suspended sediment and sediment-associated contaminants in San Francisco Bay	Schoelhammer, D. H.; Mumley, T. E.; leatherbarrow, J. E.	2007	PDF	RMP
Improved forecasting for PCBs in San Francisco Bay.	Oram, J. J.; Davis, J. A.	2007	PPT	RMP
San Francisco Bay, CA: Comprehensive ecosystem evaluation needed to discern causes of chlorophyll a increases	NOAA	2007	PDF	RMP
Emerging Problems. Progress on Identifying Contaminants of Concern	Klosterhaus, S.	2007	PPT	RMP
2006 RMP Annual Monitoring Results	San Francisco Estuary Institute	2007	PDF	RMP
Adapting an ambient monitoring program to the challenge of managing emerging pollutants in the San Francisco estuary	Hoenicke, R.; Oros, D. R.; Oram, J. J.; Taberski, K. M.	2007	PDF	RMP
Environmental Data Management Evaluating Internal Performance	Grosso, C. S.; Ross, J. R. M.; Lowe, S.; Yee, D.; Franz, A.; Stevanovic, P.	2007	PDF	RMP
Sources, transport, fate and toxicity of pollutants in the San Francisco Bay estuary	Flegal, A. R.; Davis, J. A.; Connor, M. S.; Conaway, C. H.	2007	PDF	RMP
Spatial and temporal variations in silver contamination and toxicity in San Francisco Bay	Flegal, A. R.; Brown, C. L.; Squire, S.; Ross, J. R. M.; Scelfo, G. M.; Hibdon, S.	2007	PDF	RMP
Polychlorinated biphenyls (PCBs) in San Francisco Bay	Davis, J. A.; Hetzel, F.; Oram, J. J.; McKee, L. J.	2007	PDF	RMP
The State of San Francisco Bay: Water Quality	Davis, J. A.; Connor, M. S.; Flegal, A. R.	2007	PPT	RMP
The slow recovery of the San Francisco Estuary from the legacy of organochlorine pesticides	Connor, M. S.; Davis, J. A.; Leatherbarrow, J.; Greenfield, B. K.; Gunther, A.; Hardin, D.; Mumley, T.; Werme, C.; Oram, J. J.	2007	PDF	RMP
Decadal mercury trends in San Francisco Estuary sediments	Conaway, C. H.; Ross, J. R. M.; Looker, R.; Mason, R. P.; Flegal, A. R.	2007	PDF	RMP
Monitoring the Water Quality Impacts of Wetland Restoration	Collins, J. N.	2007	PPT	RMP
A review of total dissolved copper and its chemical speciation in San Francisco Bay, California	Buck, K. N.; Ross, J. R. M; Flegal, A. R.; Bruland, K. W.	2007	PDF	RMP
Patterns and trends in sediment toxicity in the San Francisco Estuary	Anderson, B.; Hunt, J.; Phillips, B; Thompson, B.; Lowe, S.; Taberski, K.; Carr, R. S.	2007	PDF	RMP
Polybrominated Diphenyl Ethers in San Francisco Estuary	Sedlak, M.; Yee, D.; Davis, J. A.; Oros, D.; Rodigari, F.; van Bergen, S.; Crane, D.; Hoover, D.	2006	PDF	RMP
Toxic Potential of PAHs in San Francisco Estuary Sediments	Ross, J. R. M.; Oros, D. R.	2006	PDF	RMP
Polycyclic aromatic hydrocarbon (PAH) contamination in San Francisco Bay: A 10-year retrospective of monitoring in an urbanized estuary	Oros, D. R.; Ross, J. R. M.; Spies, R. M.; Mumley, T.	2006	PDF	RMP
Workshop Report: The Effects of Polycyclic Aromatic Hydrocarbons (PAH) in San Francisco Bay Sediments	Oros, D.; Connor, M.	2006	PDF	RMP
Dredging Impacts on Food-Web Bioaccumulation of DDTs in San Francisco Bay, CA	Oram, J. J.; Melwani, A. R.	2006	PDF	RMP
Estimates of suspended sediment entering San Francisco Bay from the Sacramento and San Joaquin Delta, San Francisco Bay, California	McKee, L. J.; Ganju, N.; Schoellhamer, D.	2006	PDF	RMP
Characterizing Sediment Contamination and Potential Ecological Effects in Six Tributaries of the San Francisco Bay Estuary	Lowe, S.; Anderson, B.; Phillips, B.; Grosso, C. S.; Ross, J. R. M.; Franz, A.; Stevanovic, P.; Yee, D.	2006	PDF	RMP
Organochlorine Pesticide Fate in San Francisco Bay	Leatherbarrow, J.; David, N.; Greenfield, B. K.; Davis, J. A.; Oram, J. J.	2006	PDF	RMP
The 2004 to 2005 RMP Annual Monitoring Results	San Francisco Estuary Institute	2006	PDF	RMP
Mercury in biosentinel fish in San Francisco Bay: First-year project report	Greenfield, B. K.; Jahn, A.; Grenier, J. L.; Shonkoff, S.; Sandheinrich, M.	2006	PDF	RMP
The Regional Monitoring Program: Science in Support of Managing Water Quality in San Francisco Bay	Davis, J. A.; Taberski, K.; Buchan, K.; Tucker, D.; Flegal, A. R.; Gunther, A. J.	2006	PDF	RMP
Pulse of the Estuary: Monitoring and Managing Water Quality in the San Francisco Estuary	Davis, J. A.; et.al.; Jay Davis	2006	PDF	RMP
Contamination Concentrations in Fish from San Francisco Bay, 2003	Davis, J.; Hunt, J.; Greenfield, B. K.; Fairey, R.; Sigala, M.; Crane, D.; Regalado, K.; Bonnema, A.	2006	PDF	RMP
Riverine Transport of Sediment and Mercury to North San Francisco Bay	David, N.; McKee, L. J.; Leatherbarrow, J.	2006	PDF	RMP
RMP Benthic Assessment Workshop	SFEI and the RMP	2006	HTML	RMP
Pyrethroids Workshop: Facing Up to the Challenges in Pyrethroids Methods Development and Field Monitoring	PRISM -Sediment Contamination & Toxicity Study, the PRISM-Methods Development Study, the RMP - Episodic Toxicity program, and SFEI in general.	2006	HTML	RMP
Methylmercury in San Francisco Bay Surface Sediments	Yee, D.	2005	HTML	RMP
San Francisco Bay Atmospheric Deposition Pilot Study Part 3: Dry Deposition of PAHs and PCBs	Tsai, P.; Hoenicke, R.; Yee, D.; Baker, J. E.; Bamford, H. A.	2005	PDF	RMP
Levels and Distribution of Polybrominated Diphenyl Ethers in Water, Surface Sediments, and Bivalves from the San Francisco Estuary	Oros, D. R.; Hoover, D.; Rodigari, F.; Crane, D.; Sericano, J.	2005	Link	RMP
Sources, Pathways, and Loadings: 5-Year Work Plan (2005-2009)	McKee, L. J.	2005	PDF	RMP
Using a Spatially Balanced, Random Sampling Design to Assist Informed Management Decision	Lowe, S.; Ross, J. R. M; Grosso, C. S.; Franz, A.; Stevens, D. L.	2005	HTML	RMP
Fate of Contaminants in Sediment of San Francisco Estuary: A Review of Literature and Data - Final Report	Leatherbarrow, J.; Ross, J. R. M.; David, N.; Yee, D.	2005	PDF	RMP
Concentratons and Loads of Organic Contaminants and Mercury associated with Suspended Sediment Discharged to San Francisco Bay from the Sacramento-San Joaquin River Delta, CA	Leatherbarrow, J.; McKee, L. J.; Schoelhammer, D.; Ganju, N.; Flegal, A. R	2005	PDF	RMP
2003 Annual Results: San Francisco Estuary Regional Monitoring Program for Trace Substances	San Francisco Estuary Institute	2005	HTML	RMP
San Francisco Bay Mercury News - an electronic newsletter of mercury research in the Bay Area	San Francisco Estuary Institute	2005	HTML	RMP
Pulse of the Estuary 2005: Monitoring and Managing Water Quality in the San Francisco Estuary	San Francisco Estuary Institute	2005	PDF	RMP
Legacy and Emerging Contaminants in San Francisco Bay Sport Fish, 2003	Hunt, J. A.	2005	HTML	RMP
Optimizing Transplanted Bivalve Studies for the Regional Monitorig Program for Trace Substances	Hardin, D.; Salop, P.; Bemis, B.; Applied Marine Sciences	2005	PDF	RMP
Facilitating the Exchange and Reporting of Monitoring Data	Grosso, C. S.; Ross, J. R. M.; Lowe, S.; Yee, D.; Franz, A.; Stevanovic, P.	2005	HTML	RMP
A Review of Factors Influencing Measurements of Decadal Variations in Metal Contamination in San Francisco Bay, California	Flegal, R.; Conaway, C.; Scelfo, G.; Hibdon, S.; Sanudo-Wilhelmy, S.	2005	PDF	RMP
Pulse of the Estuary 2005: Monitoring and Managing Water Quality in the San Francisco Estuary	Davis, J. A.; Grenier, J. L.; Grossinger, R.	2005	PDF	RMP
Monitoring Legacy and Emerging Pollutants at the Top of the San Francisco Bay Food Web	Davis, J. A.	2005	HTML	RMP
Regional Monitoring Program for Trace Substances in the San Francisco Estuary 2005 Program Plan	Davis, J. A.	2005	PDF	RMP
Mercury transport to San Francisco Bay through the Sacramento-San Joaquin River Delta	David, N.; McKee, L. J.; Leatherbarrow, J.	2005	PDF	RMP
Polycyclic aromatic hydrocarbons in the San Francisco Estuary water column: Sources, spatial distributions, and temporal trends (1993-2001)	Ross, J. R. M.; Oros, D.	2004	Link	RMP
Polycyclic aromatic hydrocarbons in San Francisco Estuary sediments	Oros, D. R.; Ross, J. R. M.	2004	PDF	RMP
Report of the 2003 Program Review	Berger, R.; Conomos, J.; Herrgesell, P.; Mearns, A.; Schubel, J. R.; Weisberg, S.	2004	PDF	RMP
Re-design Process of the San Francisco Estuary Regional Monitoring Program for Trace Substances (RMP)	Lowe, S.; Thompson, B; Hoenicke, R.; Leatherbarrow, J.; Taberski, K.; Smith, R.; Stevens, D.	2004	PDF	RMP
2002 Annual Results	San Francisco Estuary Institute	2004	HTML	RMP
2004 Annual Meeting Presentations of the Regional Monitoring Program for Trace Substances	San Francisco Estuary Institute	2004	HTML	RMP
2004 Pulse of the Estuary	San Francisco Estuary Institute	2004	HTML	RMP
RMP News - Newsletter of the Regional Monitoring Program	San Francisco Estuary Institute	2004	HTML	RMP
Conceptual Framework and Rationale for the Exposure and Effects Pilot Study	Hunt, J.; Davis, J. A.; Lowe, S.; Thompson, B.; Anderson, B.	2004	PDF	RMP
Mercury Contamination of Sport Fish in the Delta and its Tributaries	Greenfield, B. K.; Davis, J. A.; Ichikawa, G.; Stephenson, M.; Slotton, D. G.; Ayers, S.; Jarman, W.	2004	PDF	RMP
Seasonal, Interannual, and Long-term Variation in sport fish contamination, San Francisco Bay	Greenfield, B. K.; Davis, J. A.; Fairey, R.; Roberts, C.; Crane, D.; Ichikawa, G.	2004	Link PDF	RMP
A Simple Mass Balance Model for PAH Fate in the San Francisco Estuary	Greenfield, B. K.; Davis, J. A.	2004	PDF	RMP
A PAH Fate Model for San Francisco Bay	Greenfield, B. K.; Davis, J. A.	2004	PDF	RMP
Cisnet Technical Report: Contaminant Accumulation in Forage Fish	Davis, J.A.; Ross, J. R. M.; Fairey, R.; Roberts, C.; Ichikawa, G.; Negrey, J.; Crane, D.	2004	PDF	RMP
Cisnet Technical Report: Contaminant Accumulation In Eggs of Double-Crested Cormorants and Song Sparrows In San Pablo Bay	Davis, J. A.; Greenfield, B. K.; Ross, J. R. M.; Crane, D.; Ichikawa, G.; Negrey, J.; Spautz, H.; Nur, N.	2004	PDF	RMP
2004 RMP Program Plan	Davis, J. A.	2004	PDF	RMP
The Long-Term Fate of PCBs in San Francisco Bay	Davis, J. A.	2004	Link	RMP
Developing Water Quality Solutions for San Francisco Bay	Whyte, D.	2003	PPT	RMP
Sediment Dynamics Drive Contaminant Dynamics	Schoellhamer, D.; Shellenbarger, G.; Ganju, N.; Davis, J. A.; McKee, L. J.	2003	PPT	RMP
Monitoring of San Francisco Bay: Is the Whole Less than the Sum of the Parts?	Schubel, J. R.	2003	PPT	RMP
Mercury Contamination from Historic Mining in Water and Sediment, Guadalupe River and San Francisco Bay, CA	Thomas, M. A.; Conaway, C. H.; Steding, D. J.; Marvin-DiPasquale, M.; Abu-Saba, K. E.; Flegal, A. R.	2003	Link	RMP
Causes of Sediment Toxicity to Mytilus galloprovincialis in San Francisco Bay, California	Phillips, B. M.; Anderson, B. S.; Hunt, J. W.; Thompson, B.; Lowe, S.; Hoenicke, R.; Tjeerdema, R.	2003	Link	RMP
The Pulse of the Estuary: Monitoring and Managing Contamination in the San Francisco Estuary 1993-2001	San Francisco Estuary Institute	2003	PDF	RMP
2003 Pulse of the Estuary (Published 2003)	San Francisco Estuary Institute	2003	PDF	RMP
2003 Annual Meeting Presentations of the Regional Monitoring Program for Trace Substances	San Francisco Estuary Institute	2003	HTML	RMP
The Clean Estuary Partnership and the RMP: Comparing two stakeholder programs producing science in support of policy (2003 RMP Annual Meeting)	Kelly, J. M.	2003	PPT	RMP
A Watershed Year for RMP & CEP: Sources Pathways & Loadings 2002/2003	McKee, L. J.; Leatherbarrow, J.	2003	PPT	RMP
A review of urban runoff processes in the Bay Area: Existing knowledge, conceptual models, and monitoring recommendations	McKee, L. J.; Leatherbarrow, J.; Newland, S.; Davis, J. A.	2003	PDF	RMP
Potential for increased mercury accumulation in the Estuary food web: Issues in San Francisco Estuary Tidal Wetlands Restoration	Davis, J. A.; Yee, D.; Collins, J. N.; Schwarzbach, S. E.; Luoma, S. N.	2003	Link	RMP
San Francisco Bay PCB Food - Web Model	Gobas, F.; Wilcockson, F.	2003	PDF	RMP
PCB Movement through the Food-Web of San Francisco Bay: Development of a Model (2003 RMP Annual Meeting)	Gobas, F.; Wilcockson, J.	2003	PPT	RMP
A mass balance model for the fate of PAHs in the San Francisco Estuary	Greenfield, B. K.; Davis, J. A.	2003	PPT	RMP
Contaminant Concentrations in Fish from San Francisco Bay, 2000	Greenfield, B. K.; Davis, J. A.; Fairey, R.; Roberts, C.; Crane, D. B.; Ichikawa, G.; Petreas, M.	2003	HTML PDF	RMP
Benefits of the RMP and Challenges for the Future: Scientific Community Perspective	Gunther, A. J.	2003	PPT	RMP
PCBs Total Maximum Daily Loads, San Francisco Bay	Hetzel, F.	2003	PPT	RMP
Selenium Concentrations in Surf Scooter and Greater Scaup from the San Francisco Estuary	Hunt, J. A.; Ross, J. R. M.; Davis, J. A.; Lowe, S.; Lovvom, J.; Crane, D.; Burkholder, B.	2003	PDF	RMP
2001 Annual Results: San Francisco Estuary Regional Monitoring Program for Trace Substances	San Francisco Estuary Institute	2003	HTML	RMP
Identification and evaluation of previously unknown organic contaminants in the San Francisco Estuary (1999-2001)	Oros, D. R.	2003	PDF	RMP
Surveillance for previously unmonitored organic contaminants in the San Francisco Estuary	Oros, D. R.; Jarman, W. M.; Lowe, T.; David, N.; Lowe, S.; Davis, J. A.	2003	Link	RMP
Summary of 10 years of sediment toxicity monitoring for the San Francisco Estuary RMP	Anderson, B.; Phillips, B. M.; Hunt, J. A.; Nicely, P.; Tjeerdema, R.; Thompson, B.; Lowe, S.; Davis, J. A.; Taberski, K.	2003	PPT	RMP
Mercury deposition in a tidal marsh downstream of the historic New Almaden mining district, CA	Conaway, C. H.; Watson, E. B.; Flanders, J. R.; Flegal, A. R.	2003	PPT	RMP
The Long-Term Fate of PCBs in San Francisco Bay	Davis, J. A.	2003	PDF PPT	RMP
Choosing a Future Bay: The Long - Term Fate of PCBs and Other Organics	Davis, J. A.; Greenfield, B. K.; Leatherbarrow, J.; David, N.	2003	PPT	RMP
Persistent Toxic Chemicals of Human Health Concern in Fish from San Francisco Bay and the Sacramento River, CA	Davis, J. A.; May, M. D.; Wainwright, S. E.; Fairey, R.; Roberts, C.; Ichikawa, G.; Tjeerdema, R.; Stoelting, M.; Becker, J.; Petreas, M.; Mok, M.; McKinney, M.; Taberski, K.	2003	HTML	RMP
Monitoring Water Quality in San Francisco Bay: Lessons Learned After Ten Years of Regional Monitoring	Davis, J.A.; Taberski, K.	2003	PPT	RMP
Benefits of the RMP and Challenges for the Future (2003 RMP Annual Meeting)	Tucker, D.	2003	PPT	RMP
Organic Contaminant Concentrations in Bay Area Effluents	Yee, D.; Leatherbarrow, J.; Davis, J. A.	2002	PPT	RMP
Atmospheric Concentrations and Fluxes of Organic Compounds in the Northern San Francisco Estuary	Tsai, P.; Hoenicke, R.; Yee, D.	2002	HTML	RMP
Benefits of the Redesigned RMP to Regional Board Decision Making	Taberski, K.	2002	PPT	RMP
Episodic Ambient Water Toxicity in the San Francisco Estuary	Ogle, S.; Gunther, A.; Salop, P.; Bell, D.; Cotsifas, J.; Gold, J.	2002	PPT	RMP
Identification and evaluation of unidentified organic contaminants in the San Francisco Estuary	Oros, D. R.; David, N.	2002	PDF	RMP
Determining the Spatial Distribution of Water and Sediment Sampling Locations	Stevens, D.	2002	PPT	RMP
Estimation of Means, Totals, and Distribution Functions from Probability Survey Data	Stevens, D.	2002	PDF	RMP
The Design Process for the Status and Trends Component	Lowe, S.; Thompson, B.; Hoenicke, R.; Leatherbarrow, J.; Smith, R. T.; Stevens, D.; Grosso, C. S.; DIWG	2002	PPT	RMP
The Pulse of the Estuary: Monitoring and Managing Contamination in the San Francisco Estuary, 2000 Update	May, M.	2002	PDF	RMP
The Pulse of the Estuary: 2000 Update	May, M.	2002	PPT	RMP
Loadings of Particles and Contaminants to the Bay from the Central Valley	McKee, L. J.	2002	PPT	RMP
Estimates of suspended-sediment flux entering San Francisco Bay from the Sacramento and San Joaquin Delta	McKee, L. J.; Ganju, N.; Schoellhamer, D.; Davis, J. A.; Yee, D.; Leatherbarrow, J.; Hoenicke, R.	2002	PDF	RMP
Urban Runoff Literature Review (TMDL Presentation)	McKee, L. J.; Leatherbarrow, J.; Newland, S.; Davis, J. A.	2002	PDF	RMP
Summary of Suspended-Sediment Concentration Data, San Francisco Bay, California, Water Year 2000	Buchanan, P. A.; Ganju, N. K.	2002	Link	RMP
Surveillance Monitoring in the RMP	David, N.; Oros, D.; Risebrough, R.	2002	PPT	RMP
Water Quality in San Francisco Bay	Davis, J. A.	2002	PPT	RMP
New Directions for the RMP: An Overview	Davis, J. A.	2002	PPT	RMP
The long term fate of PCBs in San Francisco Bay	Davis, J. A.	2002	PPT	RMP
NorCal SEATAC 2001 - Seafood Contamination and Consumption	Davis, J.A.; Taberski, K.	2002	PPT	RMP
Stable isotopes may help explain fish contamination patterns in the Estuary	Greenfield, B. K.	2002		RMP
Contaminant concentrations in fish: 2000 (Oral Presentation)	Greenfield, B. K.; Davis, J. A.	2002	PDF PPT	RMP
Contaminant concentrations in fish: 2000	Greenfield, B. K.; Davis, J. A.	2002		RMP
Copper and Nickel Impairment Assessment (2002 RMP Annual Meeting)	Grovhoug, T.; Hall, T.; Olivieri, E.; Walker, L.	2002	PPT	RMP
Copper and Nickel TMDL Development: Lower South Bay (2002 RMP Annual Meeting)	Tetra Tech. Inc.	2002	PPT	RMP
Regional Monitoring of Water Quality in San Francisco Bay: Lessons Learned After Ten Years	San Francisco Estuary Institute	2002	PPT	RMP
Process and Products for RMP Redesign Implementation by January 2002	San Francisco Estuary Institute	2002	HTML	RMP
2000 Annual Results: San Francisco Estuary Regional Monitoring Program for Trace Substances	San Francisco Estuary Institute	2002	HTML	RMP
2000 Pulse of the Estuary	San Francisco Estuary Institute	2002	PDF	RMP
Contaminants at the Estuary Interface	Leatherbarrow, J.; Hoenicke, R.; McKee, L. J.	2002	PPT	RMP
Estuary Interface Pilot Study (1996 - 1999)	Leatherbarrow, J.; Hoenicke, R.; McKee, L. J.	2002	PDF	RMP
Current Regulatory Approach to Copper in San Francisco Bay: Source Control, Pollution Prevention, and Monitoring	Looker, R.	2002	PPT	RMP
SFEI: More Than Just RMP (2002 RMP Annual Meeting)	Thompson, B.	2002	PPT	RMP
San Francisco Bay Seafood Consumption Report	California Department of Health Services Environmental Health Investigations Branch; San Francisco Estuary Institute	2001	HTML PDF	RMP
San Francisco Bay Atmospheric Deposition Pilot Study (Trace Metals): Presentation at 2001 WEFTEC	Tsai, P.; Hoenicke, R.; Hansen, E.; Lee, K.; Tucker, D.	2001	PDF	RMP
San Francisco Bay Atmospheric Deposition Pilot Study Part 2: Trace Metals	Tsai, P.; Hoenicke, R.; Hansen, E.; Lee, K.	2001	PDF	RMP
San Francisco Bay Episodic Toxicity Report - 2000	Ogle, S. R.; Gunther, A. J.; Salop, P.; Bell, D.; Cotsifas, J.; Gold, J.	2001	PDF	RMP
San Francisco Bay Atmospheric Deposition Pilot Study Part 1: Mercury	Tsai, P.; Hoenicke, R.	2001	HTML PDF	RMP
Field Sampling Manual for the Regional Monitoring Program for Trace Substances	David, N.; Bell, D.; Gold, J.	2001	PDF	RMP
The San Francisco Bay Seafood Consumption Study Report	Davis, J. A.	2001	HTML	RMP
Technical Report of the Sources, Pathways, and Loadings Workgroup	Davis, J. A.; Abu-Saba, K.; Gunther, A. J.	2001	PDF PDF	RMP
Contaminant concentrations in Delta fish	Greenfield, B. K.	2001	PDF	RMP
RMP Re-design Extended Schedule	San Francisco Estuary Institute	2001	HTML	RMP
1999 Annual Results: San Francisco Estuary Regional Monitoring Program for Trace Substances	San Francisco Estuary Institute	2001	HTML PDF	RMP
The Pulse of the Estuary: Monitoring and Managing Contamination in the San Francisco Estuary 1993-1999	San Francisco Estuary Institute	2001	PDF	RMP
1999 Pulse of the Estuary	San Francisco Estuary Institute	2001	PDF	RMP
Sediment Toxicity Identification Evaluations San Francisco Bay RMP for Trace Substances - Progress Report	Anderson, B. S.; Phillips, B. M.; Hunt, J. W.	2001	PDF	RMP
Results of the Benthic Pilot Study 1994 - 1997, Part 1	Thompson, B.; Lowe, S.; Kellogg, M.	2000	PDF	RMP
An overview of contaminant-related issues identified by monitoring in San Francisco Bay	Thompson, B.; Hoenicke, R.; Davis, J. A.; Gunther, A.	2000	HTML	RMP
Investigations of Sediment Elutriate Toxicity at Three Estuarine Stations in San Francisco Bay, California	Phillips, B. M.; Anderson, B. S.; Hunt, J. W.	2000	PDF	RMP
San Francisco Bay Episodic Toxicity Report: 1999 Progress Report	Ogle, S. R.; Gunther, A. J.	2000	HTML PDF	RMP
Episodic Toxicity in the San Francisco Bay System - 2000	Ogle, S. R.; Gunther, A.; Salop, P.; Bell, D.; Cotsifas, J.; Gold, J.	2000	PDF	RMP
The Pulse of the Estuary: Tracking Contamination with the Regional Monitoring Program 1993-1998	May, M.	2000	PDF	RMP
1998 Pulse of the Estuary	San Francisco Estuary Institute	2000	PDF HTML	RMP
Policy Statement on Requests for Collaborative Work - Regional Monitoring Program	San Francisco Estuary Institute	2000	HTML	RMP
1998 Annual Results: San Francisco Estuary Regional Monitoring Program for Trace Substances	San Francisco Estuary Institute	2000	HTML PDF	RMP
Final RMP Pilot/Special Study Selection Procedure (Approved October 16, 2000)	San Francisco Estuary Institute	2000	HTML	RMP
Draft RMP Data Interpretation Policy	San Francisco Estuary Institute	2000	HTML	RMP
Protocol for Accessing and Sampling Archived Sediments from the San Francisco Estuary RMP for Trace Substances	San Francisco Estuary Institute	2000	HTML	RMP
Predicting mercury levels in fish: use of water chemistry, trophic ecology, and spatial traits	Greenfield, B. K.; Hrabik, T. R.; Harvey, C. J.; Carpenter, S. R.	2000	PDF	RMP
Contaminant Concentrations in Fish from San Francisco Bay, 2000	Greenfield, B. K.; Davis, J. A.; Fairey, R.; Roberts, C.; Crane, D.B.; Ichicawa, G.; Petreas, M.	2000	HTML PDF	RMP
Contaminant Concentrations in Fish from the Sacramento - San Joaquin Delta and Lower San Joaquin River, 1998	Davis, J. A.; May, M.; Ichikawa, G.; Crane, D.	2000	PDF	RMP
Contaminant Concentrations in Fish: 2000 (2002 RMP Annual Meeting)	Davis, J. A.; Greenfield, B. K.	2000	PDF PPT	RMP
Sediment Contamination in San Leandro Bay, CA	Daum, T.; Toia, R.; Fairey, R.; Anderson, J.; Jones, J.	2000	PDF	RMP
Patterns of Water-Quality Variability in San Francisco Bay During the First Six Years of the RMP, 1993-1998	Cloern, J. E.; Cole, B. E.; Edmunds, J. L.; Schraga, T. S.; ArnsbergScripps, A.	2000	HTML PDF	RMP
An Overview of Contaminant-Related Issues Identified by Monitoring in San Francisco Bay - Abstract	Thompson, B.; Hoenicke, R.; Davis, J. A.; Gunther, A.	1999	HTML	RMP
Cyanobacterial Populations in San Francisco Bay	Palenik, B.; Flegal, R. A.	1999	HTML PDF	RMP
Recommendations for Improvement of RMP Sediment Monitoring	Abu-Saba, K.; Amdur, J.; Anderson, B.; Brown, C.; Daum, T.; Davis, J. A.; Delorey, J.; Flegal, R.; Gregg, J.; Hornberger, M.; Lee III, H.; Lowe, S.; Luoma, S. N.; Scholelhamer, D.; Taberski, K.; Thompson, B.; Young, D.	1999	HTML PDF	RMP
Episodic Toxicity in the San Francisco Bay System - 1999	Ogle, S. R.; Gunther, A.	1999	HTML PDF	RMP
1999 Quality Assurance Project Plan for the Regional Monitoring Program for Trace Substances	Lowe, S.; Hoenicke, R.; Davis, J. A.; Scelfo, G.	1999	HTML PDF	RMP
Report of the Pesticide Workgroup	San Francisco Estuary Institute	1999	HTML PDF	RMP
RMP Re-design Schedule	San Francisco Estuary Institute	1999	HTML	RMP
1997 Annual Report: San Francisco Estuary Regional Monitoring Program for Trace Substances	San Francisco Estuary Institute	1999	HTML PDF	RMP
Report of the Bioaccumulation Workshop	San Francisco Estuary Institute	1999	HTML PDF	RMP
SFEI Policy: Release of Preliminary Data from the RMP (Revised May 10, 1999)	San Francisco Estuary Institute	1999	HTML	RMP
Technical Report of the Chlorinated Hydrocarbon Workgroup	Davis, J. A.; Yoon, J.	1999	HTML PDF	RMP
Contaminants Concentrations in Fish from San Francisco Bay, 1997	Davis, J. A.; May, M. D.; Wainwright, S. E.; Fairey, R.; Roberts, C.; Ichikawa, G.; Tjeerdema, R.; Stoelting, M.; Becker, J.; Petreas, M.; Mok, M.; McKinney, M.; Taberski, K.	1999	HTML PDF	RMP
Field Sampling Manual for the RMP for Trace Substances (version 1, January 1999)	Bell, D.; Gold, J.; Salop, P.	1999	HTML	RMP
Relationship Between Sediment Contamination and Toxicity in San Francisco Bay	Thompson, B.; Anderson, B.; Hunt, J.; Taberski, K.; Phillips, A.	1998	HTML	RMP
Time Series of Suspended Solids Concentration, Salinity, Temperature, and Total Mercury Concentration in San Francsico Bay During Water Year 1998	Ruhl, C. A.; Schoelhamer, D. H.	1998	PDF	RMP
1996 Annual Report: San Francisco Estuary Regional Monitoring Program for Trace Substances	San Francisco Estuary Institute	1998	PDF	RMP
1996 Executive Summary: San Francisco Estuary Regional Monitoring Program for Trace Substances	San Francisco Estuary Institute	1998	PDF	RMP
Management Questions Guiding the RMP for Trace Substances - First Edition, 1998	San Francisco Estuary Institute	1998	HTML	RMP
RMP Objectives-Revised April 15, 1998	San Francisco Estuary Institute	1998	HTML	RMP
RMP Watershed Pilot Study: An Information Review with Emphasis on Contaminant Loading, Sources, and Effects	Daum,T.; Hoenicke, R.	1998	HTML PDF	RMP
RMP Annual Meeting 1998 (Transcript)	Collins, J. N.	1998	PDF	RMP
Spatial and Temporal Variability in the Aquatic Cycling of Chromium	Abu-Saba, K.	1998	HTML	RMP
1995 Annual Report: San Francisco Estuary Regional Monitoring Program for Trace Substances	San Francisco Estuary Institute	1997	PDF	RMP
1995 Executive Summary: San Francisco Estuary Regional Monitoring Program for Trace Substances	San Francisco Estuary Institute	1997	PDF	RMP
Contaminant Concentrations in Fish from San Francisco Bay, 1997	Davis, J. A.; May, M. D.; Wainwright, S. E.; Fairey, R.; Roberts, C.; Ichikawa, G.; Tjeerdema, R.; Stoelting, M.; Becker, J.; Petreas, M.; Mok, M.; McKinney, M.; Taberski, K.	1997	HTML PDF	RMP
Five-Year Program Review: Regional Monitoring Program for Trace Substances in the San Francisco Estuary	Boesch, D.; Cushman, R.; Crooks, W.; Mearns, A.; Metzger, S.; O'Connor, T.; Stewart-Oaten, A.; Bernstein, B.; O'Connor, J.	1997	HTML	RMP
Further Development of Chronic Ampelisca abdita Bioassay as an Indicator of Sediment Toxicity	wWeston, D. P.	1996	HTML PDF	RMP
Time Series of Trace Element Concentrations Calculated from Time Series of Suspended Solid Concentrations and RMP Water Samples	Schoellhamer, D. H.	1996	HTML PDF	RMP
Mercury Effects, Sources, and Control Measures	Jones, A. B.; Slotton, D. G.	1996	HTML PDF	RMP
Methods for Analysis of Spatial and Temporal Patterns	Jassby, A. D.	1996	HTML PDF	RMP
1994 Annual Report: San Francisco Estuary Regional Monitoring Program for Trace Substances	San Francisco Estuary Institute	1996	PDF	RMP
1994 Executive Summary: San Francisco Estuary Regional Monitoring Program for Trace Substances	San Francisco Estuary Institute	1996	PDF	RMP
1993 Annual Report: San Francisco Estuary Regional Monitoring Program for Trace Substances	San Francisco Estuary Institute	1994	PDF	RMP

Watershed reports

Title	Author	Year	Link	SFEI Program
A Sediment Budget for Two Reaches of Alameda Creek: support for flood control channel management	Pearce, S.; Bigelow, P.; McKee, L .J.; Gilbreath, A.	2009	PDF	WS
Green Infill for Clean Stormwater	David, N.; McKee, L .J.; Krebs, Jennifer	2009	PDF	WS
Mercury Concentrations and Loads in a Large River System Tributary to San Francisco Bay, California, USA	David, N.; McKee, L .J.; Black, F. J.; Flegal, A. R; Conaway, C. H.; Schoelhamer, D. H.; Ganju, N. K.	2009	PDF	WS
Going Organic Project	David, N.; McKee, L .J.	2009	PDF	WS
Sustainable Cotton Project	David, N.	2009	PDF	WS
Best Management Practices in Stone Fruit Project	David, N.	2009	PDF	WS
Comparison of Agricultural Runoff between Organic Farming and Conventional Chemical Farming	David, N.	2009	PDF	WS
Alameda Creek Sediment Forum	McKee, L. J.; Gilbreath, A. N.; Pearce, S.; Bigelow, P.; Collins, J.; Ridolfi, K.	2008	HTML	WS
Development of an environmental indicator system for watershed-based decision-making and tracking the outcomes of beneficial use restoration in the San Joaquin River basin	Jabusch, T. W.; Swanson, T.; Pawley, A.; Hoenicke, R.	2008	PDF	WS
Setting Goals and Defining Watershed and Stream "Health" to Better Integrate Policies, Programs, and Projects	Hoenicke, R.; Collins, J. N.	2008	PDF	WS
A Sediment Budget for Two Reaches of Alameda Creek	Bigelow, P.; Pearce, S.; McKee, L. J.; Gilbreath, A. N.	2008	PDF	WS
Critical Coastal Areas Program, Phase I Final Report	Ridolfi, K.; Hoenicke, R.; Van Velsor, K.	2007	HTML PDF	WS
Appendix 1: All Deliverables Submitted for the Critical Coastal Areas Program, Phase I	Ridolfi, K.	2007	HTML PDF	WS
Stream Inventory Report for La Honda Creek: Prepared for the Midpeninsula Regional Open Space District	Pearce, S.; Gilbreath, A. N.; McKee, L. J.	2007	PDF	WS
Ecology, Assemblage Structure, DIstribution, and Status of Fishes in Streams Tributary to the San Francisco Estuary, California	Leidy, R. A.	2007	HTML	HEP WS
Aligning Socio-Economic and Ecological Condition Valuation	Hoenicke, R.; Collins, J. N.	2007	PDF	WS
Comparison o Agricultural Run-off between Biological Farming and Conventional Chemical Farming	David, N.; Thomas, F.; Gibbs, M.	2007	PDF	WS
Comparison of Agricultural Run-off between Biological Farming and Conventional Chemical Farming	David, N.; Thomas, F.; Gibbs, M.	2007	PDF	WS
Pinole Creek Sediment Source Assessment: Pavon Creeks Sub-basin	Pearce, S.; McKee, L. J.; Shonkoff, S.	2006	PDF PDF	WS
Concentrations and Loads of Mercury, PCBs and PBDEs in the Lower Guadalupe River, San Jose, California: Water Years 2003, 2004, and 2005.	McKee, L. J.; Oram, J. J.; Leatherbarrow, J.; Bonnema, A.; Heim, W.; Stephenson, M.	2006	PDF	WS
Mercury budget for stormwater conveyances in the San Francisco Bay Area: Towards achieving TMDL management goals for sediment and fish tissue.	McKee, L. J.; Mangarella, P.	2006	PDF	WS
Review of methods to reduce urban stormwater loads	San Francisco Estuary Institute; GeoSyntec	2006	HTML	WS
Trends in Suspended Sediment Input to the San Francisco Bay for Local Tributaries Watersheds	Philip Williams and Associates, Ltd.	2005	PDF	WS
Pinole Creek Watershed Sediment Source Assessment. A technical report of the Regional Watershed Program, San Francisco Estuary Institute (SFEI), Oakland, California. (appendix only)	Pearce, S.; McKee, L. J.; Shonkoff, S. B.	2005	PDF	WS
Pinole Creek Watershed Sediment Source Assessment. A technical report of the Regional Watershed Program, San Francisco Estuary Institute (SFEI), Oakland, California. (report only -- no appendix)	Pearce, S.; McKee, L. J.; Shonkoff, S. B.	2005	PDF	WS
Pinole Creek Watershed Sediment Source Assessment. A technical report of the Regional Watershed Program, San Francisco Estuary Institute (SFEI), Oakland, California. (plotter-sized landslide map only)	Pearce, S.; McKee, L. J.; Shonkoff, S. B.	2005	PDF	WS
Pinole Creek Watershed Sediment Source Assessment: A sediment budget approach highlighting watershed-scale sediment-related processes and supply to the Bay	Pearce, S.; McKee, L. J.; Arnold, C.; Hokholt, L.	2005	HTML	WS
Concentrations and loads of mercury, PCBs, and OC pesticides in the lower Guadalupe River, San Jose, California: Water Years 2003 and 2004	McKee, L. J.; Leatherbarrow, J.; Oram, J. J.	2005	PDF	WS
Characterization of mercury concentrations in suspended sediment loads in Guadalupe River and Coyote Creek, San Jose, California: Can TMDL targets be met?	McKee, L. J.; Leatherbarrow, J.	2005	HTML	WS
Mercury and methylmercury loads entering San Francisco Bay from the historic New Almaden mercury mines	McKee, L. J.; Leatherbarrow, J.	2005	HTML	WS
Human influences on nitrogen and phosphorus concentrations in creek and river waters of the Napa and Sonoma watersheds, northern San Francisco Bay, California	McKee, L .J.; Krottje, P.	2005	PDF	WS
A Watershed Monitoring Strategy for Napa County	Hoenicke, R.; Hayworth, J.	2005	PDF	WS
San Pedro Creek Watershed Sediment Source Analysis, Volume III: Tributary sediment source assessment	Pearce, S.; McKee, L. J.; Shonkoff, S. B.	2004	PDF	WS
Fluvial Geomorphology, Hydrology, and Riparian Habitat of La Honda Creek Along the Hwy 84 Transportation Corridor, San Mateo County, California	Pearce, S.; McKee, L. J.; Striplen. C. J.	2004	HTML	WS
Relative effects of fluvial processes and historical land use on channel morphology in three sub-basins, Napa River basin, California, USA	Pearce, S.; Grossinger, R. M.	2004	PDF	WS HEP
The concentration and load of PCBs, OC pesticides, and mercury associated with suspended sediments in the lower Guadalupe River, San Jose, California. A Technical Report of the Regional Watershed Program	McKee, L. J.; Leatherbarrow, J.; Eads, R.; Freeman, L.	2004	PDF	WS
Ecological, Geomorphic, and Land Use History of Sulphur Creek Watershed: A component of the watershed management plan for the Sulphur Creek watershed, Napa County, California.	Grossinger, R. M.; Striplen. C. J.; McKee, L. J.; Brewster, E.	2004	PDF	HEP WS
Ecological, Geomorphic, and Land Use History of Carneros Creek Watershed: A component of the watershed management plan for the Carneros Creek watershed, Napa County, California	Grossinger, R. M.; Striplen. C. J.; Brewster, E.; McKee, L. J.	2004	PDF	HEP WS
Channel Geomorphology Assessment: A component of the watershed management plan for the Sulphur Creek watershed, Napa County, California	Pearce, S.; O'Connor, M.; McKee, L. J.; Jones, B.	2003	PDF	WS
Geomorphic Processes and Salmonid Habitat in Sulphur and Carneros Creeks, Napa River Watershed, Napa County California (PowerPoint presentation)	Pearce, S.; O'Connor, M.; McKee, L. J.; Jones, B.	2003	PDF	WS
A Geographic History of the San Lorenzo Creek Watershed: Landscape Patterns Underlying Human Activities (w / 8.5x11 or 11 x 17 map)	Grossinger, R. M.; Brewster, E.	2003	PDF PDF	HEP WS
Sediment and Contaminant Loading from the Guadalupe River: Implications for TMDLs and Mass Budget Models (presented at NorCal SETAC 2003 Conference)	Leatherbarrow, J.; McKee, L. J.	2003	PDF	WS
Regional Watershed Program (PowerPoint presentation presented to the SFEI Board of Directors on 3/28/03)	McKee, L. J.	2003	PDF	WS
Contrasting Fluvial Geometric Proceses and Historic Change Through Time: Supporting Watershed Management in Tributaries of the Napa River Watershed (poster)	Pearce, S.; Grossinger, R. M.; O'Connor, M.; McKee, L. J.	2003	PDF	WS
Channel Geomorphology Assessment: A component of the watershed management plan for the Carneros Creek watershed, Napa County, California	Pearce, S.; O' Connor, M.; McKee, L. J.; Jones, B.	2003	PDF	WS
Mapping Urbanized and Rural Drainages in the Bay Area: A Tool for Improved Management of Stormwater Contaminants Derived from Small Tributaries	Wittner, E.; McKee, L. J.	2002	PDF	WS
The National Hydrography Data Set: San Francisco Bay Area	Wittner, E.; McKee, L. J.	2002	PDF	WS
Napa River Sediment TMDL Baseline Study: Geomorphic Processes and Habitat form and function in Soda Creek	Pearce, S.; O'Connor, M.; Grossinger, R. M.; McKee, L. J.	2002	PDF	WS
Pathogen Occurrence and Analysis in Relation to Water Quality Attainment in San Francisco Bay Area Watersheds	Glasner, A.; McKee, L. J.	2002	PDF	WS
Sources, Pathways and Loadings Documents	San Francisco Estuary Institute	2002	HTML	WS
Results of the Estuary Interface Pilot Study, 1996-1999, Final Report. (Technical Report of the Sources Pathways and Loading Work Group (SPLWG) of the San Francisco Estuary Regional Monitoring Program for Trace Substances (RMP))	Leatherbarrow, J. E.; Hoenicke, R.; McKee, L. J.	2002	PDF	WS
Report of Science Advisors: Solano County Natural Community Conservation Plan Habitat Conservation Plan	Noss, R.; Amundson, R.; Arnold, D.; Bradbury, M.; Collinge, S.; Grewell, B.; Grosberg, R.; McKee, L. J.; Northern, P.; Swanson, C.; Yoshiyama, R.; DiGennaro, B.; Russell, V.	2002	PDF	WS
Estimating sediment related contaminant loads entering San Francisco Bay from the Central Valley: A contribution to Region 2 and Region 5 TMDLs	McKee, L. J.	2002	PDF	WS
Water quality modeling: Characterization of nutrients in surface waters and modeling at the watershed scale (Guest lecture, University of California at Berkeley, Civil & Environmental Engineering CE 290C: Watersheds and Water Quality, February 21, 2002)	McKee, L. J.	2002	PDF	WS
Measurement of sediment and contaminant loads from the Guadalupe River watershed: sampling and analysis plan	McKee, L. J.	2002	PDF	WS
Estimation of Total Mercury Fluxes Entering San Francisco Bay from the Sacramento and San Joaquin River Watersheds (Technical Memo)	McKee, L. J.; Foe, C.	2002	PDF	WS
Land Use Timeline for Crow Canyon and the San Lorenzo Creek Watershed	Brewster, E.; Grossinger, R. M.	2001	PDF	HEP WS
Sediment loads transported from the Delta: Implications for management of pollutants of concern	McKee, L. J.	2001	PDF	WS
Historic Drainage Patterns of the Alameda Watershed (Transcript)	Collins, J. N.	2001	PDF	WS
Determining Loads and Trends in Small Tributaries	McKee, L. J.	2001	PDF	WS
The use of the Simple Model for informing environmental science and management: Is this the right tool for your needs? (Presentation at the Bay Area Stormwater Management Agencies Association (BASMAA) modelling forum, San Francisco Regional Water Quality Control Board, Oakland, May, 2001)	McKee, L. J.	2001	PDF	WS
The Challenges in Designing an Effective Regional Watershed Sampling Program	McKee, L. J.	2001	PDF	WS
Robert A. Leidy Fish Survey 1992-1998 Bay Area Stream Fishes	Leidy, R. A.	1999	PDF	HEP WS
Bay Area Watersheds Science Approach	San Francisco Estuary Institute	1998	PDF	WS
A Bay Area Watersheds Science Approach (Abstract)	Collins, L. M.; Collins, J. N.; Hoenicke, R.; Grossinger, R. M.	1998	PDF	WS
The Watershed and the Baylands (Transcript)	Collins, J. N.	1998	PDF	WS
Watershed Management in the Bay Area (Transcript)	Collins, J. N.	1997	PDF	WS

Wetlands reports

Title	Author	Year	Link	SFEI Program
Regional Wetlands Monitoring in San Francisco Bay (Abstract)	Collins, J. N.		PDF	WL
Regional Wetlands Monitoring in San Francisco Bay (Transcript)	Collins, J. N.		PDF	WL
Sustaining Regional Partnerships for Conservation: Sharing the Future	Collins, J. N.		PPT	WL
WRMP Factsheet Wetland and Riparian Base Map	Williams, M.; Cayce, K.	2009	PDF	WL
South Baylands Mercury Project: Assessing Differences in Food-web Mercury Associated with Restoring Salt Ponds to Tidal Marsh in South San Francisco Bay	Robinson, A.; Grenier, J .L.; DiPasquale, M.M.; Drury, D.; Melwani, A.; Bezalel, S.; Hunt, J.; Collins, J. N	2009	PDF	WL
Bay Area Base Map of Aquatic Habitats	Klatt, M.; Cayce, K.; Williams, M.; Collins, J. N.	2009	PDF	WL
Californias Statewide Survey Of Tidal Wetland Condition	Collins, J.; Sutula, M.; Williams, M.; Clark, R.; Roberts, C.; Stein, E.; Grosso, C.; Wiskind, A.; Solek, C.; May, M.; O' Connor, K.; Fetscher, E; Grenier, J .L.; Pearce, S.; Robinson, A.; Clark, C.; Rey, K.; Morrissette, S.; Eicher, A.; Pasquinelli, R.; Ritter, K.; Ross, J.	2009	PDF	WL
Wetland Tracker Factsheet, Bay Area, Level 1: Landscpae Assessment	San Francisco Estuary Institute	2008	PDF	WL
California Rapid Assessment Method (CRAM) Fact Sheet, Level 2, State version	San Francisco Estuary Institute	2008	PDF	WL
Developing Tools to Help Protect and Manage California Wetlands, Streams, and Riparian Resources	Collins, J. N.; Grenier, J. L.; Sutula, M.	2008	Link	WL
South Baylands Mercury Project: Developing biosentinel species to monitor changes in food-web mercury for the South Bay Salt Pond Restoration Project	Hunt, J. A.; Grenier, J. L.; Robinson, A.; Bezalel, S.; Norman, C.; Collins, J.	2007	PDF	WL
CRAM Evaluation of Wetland Conditions	Collins, J. N.	2007	PDF	WL
Ecological Connections between Baylands and Uplands: Examples from Marin County	Collins, J.; Didonato, J.; Geupel, G.; Grenier, J. L.; Kucera, T.; Lidicker, B.; Rainey, B.; Rottenborn, S.	2007	PDF	WL HEP
Environmental threats to tidal marsh vertebrates of the San Francisco Bay Estuary	Takekawa, J. Y.; Woo, I.; Spautz, H.; Nur, N.; Grenier, J. L.; Malamud-Roam, K.; Nordby, J. C.; Cohen, A. N.; Malamud-Roam, F.; Wainwright-De La Cruz, S. E.	2006	PDF	BI WL
First evidence of conspecific brood parasitism in song sparrows with comments on methods sufficient to document this behavior	Latif, Q.; Grenier, J. L.; Heath, S.; Ballard, G.; Hauber, M. E.	2006	PDF	WL
Comparison of Methods to Map California Riparian Areas	Collins, J.; Sutula, M.; Stein, E.; Odaya, M.; Zhang, E.; Larned, K.	2006	PDF	WL
Second Annual Report Montezuma Wetlands Restoration Project Technical Review Team	Collins, J.; Grosso, C. S.	2006	PDF	WL
The Wetland Project Tracker	May, M.; Breaux, A.; Martindale, M.; Tuxen, K.; Collins, J.; Delaney, M.; Featherston, T.; Zhang, E.	2005	HTML	WL
South Bay Salt Pond Restoration Project Interactive Map	Larned, K.	2005	HTML	WL
An Integrated Wetlands Assessment Program for the San Francisco Bay Area and California	Grenier, J. L.; Featherston T.; Grosso, C. S.; Larned, K.; May, M.; Hoenicke, R.; Collins, J.; Clark, R.; Breaux A.; Potter, C.; Wheetly, M.; Stein, E.; Sutula, M.; Fetscher, B.	2005	HTML	WL
Choosing the Best Map: Availability, Accuracy, and Accountability (Abstract)	Der, Z.; Grossinger, R. M.; Wong, C.; Collins, J. N.	2005	PDF	WL
Analysis of Reference Tidal Channel Plan Form for the Montezuma Wetlands Restoration Project	Pearce, S.; Collins, J. N.	2004	PDF	WL
Wetland Habitat Changes in the Rodeo Lagoon Watershed, Golden Gate National Recreation Area, Marin County, CA	Striplen. C. J.; Grossinger, R. M.; Collins, J. N.	2004	PDF	HEP WL
Baylands Vegetation Mapping Protocol (Version 1.0)	Collins, J. N.; Stralberg, D.	2004	PDF	WL
First Annual Report of the Montezuma Wetlands Restoration Project Technical Review Team	Collins, J. N.; Grosso, C. S.	2004	PDF	WL
Synthesis of Scientific Knowledge: for maintaining and improving functioning of the South Bay Ecosystem and Restoring Tidal Salt Marsh and Associated Habitats over the next 50 years at Pond and Pond-Complex Scales	Collins, J. N.; Grossinger, R. M.	2004	PDF	WL HEP
Elkhorn Slough Tidal Marsh Plan: Possible Lessons from the Bay Area Wetland Ecosystem Goals Project (PowerPoint presentation)	Collins, J. N.	2004	PPT	WL
Physical and Ecological Characteristics of the Historic Baylands of South San Francisco Bay (Poster for the 2003 State of the Estuary Conference)	Grossinger, R. M.; Collins, J. N.; Striplen. C. J.; Burns, T.; Brewster, E.; Richard, C.; Strode, E.	2003	PDF	HEP WL
Ambient Survey of Intertidal Ecological Health and Stressors	Collins, J. N.; Wittner, E.; Grosso, C. S.; Stralberg, D.; Sutula, M.	2003	PDF	WL
California Rapid Assessment Method (CRAM) - Part 2	Collins, J. N.	2003	PPT	WL
CRAM: Synopsis of first CRAM Core Team meeting	Collins, J. N.	2003	PDF	WL
Bay Area Wetlands Ecosystem Goals Project: Bay Area Wetland Project Map	Collins, J. N.; Siegel, S.; Stralberg, D.	2003	PDF	WL
Coyote Hills Wetland Enhancement and Drainage Improvement (Project Summary Outline)	Baker, R.; Ackerman, H.; Wolin, F.; DiDonato, J.; Kent, J.; Collins, J. N.	2003	PDF	WL
California Rapid Assessment Method (CRAM) - Part 1	Collins, J. N.	2003	PPT	WL
Draft Guidelines for Developing the CRAM Metrics	Collins, J. N.	2003	PDF	WL
South and Central Bay Wetlands Projects	Collins, J. N.	2003	PDF	WL
Universal Wetland Ecological Features (Graphic)	Collins, J. N.	2003	PDF	WL
Coyote Hills Area Habitat Conceptual Planning for 2002-03	Collins, J. N.	2002-2003	PDF	WL
Tidal Marsh Vegetation	Vasey, M.; Callaway, J.V.; Parker, T.	2002	PDF	WL
The tidal marsh food web	Grenier, J. L.; Collins, J.; Davis, J. A.; Greenfield, B. K.	2002	PDF	CMR WL
Development of the Wetlands Regional Monitoring Program for the San Francisco Estuary	San Francisco Estuary Institute	2002	PDF	WL
Yuma Bat Protocol	Johnston, D.	2002	PDF	WL
The Historical Geography and Biogeography of Tidal Salt Marshes (Abstract)	Malamud-Roam, K.; Malamud-Roam, F.; Collins, J. N.; Ingram, B. L.; Watson, E.	2002	PDF	WL
Mission Statement for the Wetlands Science Program	Collins, J. N.	2002	PDF	WL
Program Development for the Wetlands Science Program	Collins, J. N.	2002	PDF	WL
Montezuma Wetlands Monitoring Project Technical Review Team (TRT) First Information Package	Collins, J. N.; Grosso, C. S.	2002	PDF	WL
Sediment Contaminants	Collins, J. N.; May, M.; Davis, J. A.	2002	PDF	WL
Data Collection Protocol Distribution, Abundance, and Treatment of Non-indigenous Speicies of Cordgrass in the San Francisco Estuary	Collins, J. N.; May, M.; Smith, D.; Klohr, S.; Zaremba, K.	2002	PDF	WL
River Otter Protocol	Breaux, A.; Zielinski, W.; Kucera, T.	2002	PDF	WL
Sediment Protocols	Callaway, J.; Stuart, S.	2002	PDF	WL
Monitoring the US West Coast: An Assessment of Californias Estuaries and the Pacific Ocean:Spatial Hierarchy and its Rationale	Collins, J. N.	2002	PDF	WL
California and the World Ocean 2002 (Abstract for Session on California Coastal Wetlands Issues)	Collins, J. N.	2002	PDF	WL
Summary of Crissy Field Monitoring Elements	Collins, J. N.	2002	PDF	WL
San Francisco Estuary Wetalnds Regional Monitoring Program Plan: Version 1, Framework and Protocols	Collins, J. N.	2002	PDF	WL
Crissy Field Monitoring Technical Review Team (Project Description)	Collins, J. N.	2002	PDF	WL
Pacific Estuarine Ecosystem Indicators Research Consortium (PEEIR): Generalized Conceptual Models Wetlands Regional Monitoring Program	Collins, J. N.	2002	PDF	WL
Executive Summary 2002 (Wetlands Science Program)	Collins, J. N.	2002	PDF	WL
Geographic Scope of the Wetlands Science Program	Collins, J. N.	2002	PDF	WL
Executive Summary: SFEI Component of the Integrated Regional Wetlands Monitoring Pilot Project	Collins, J. N.	2002	PDF	WL
Management Structure of the Wetlands Science Program	Collins, J. N.	2002	PDF	WL
Major Technical Components of the Wetlands Science Program	Collins, J. N.	2002	PDF	WL
Management Questions for the Wetlands Science Program	Collins, J. N.	2002	PDF	WL
Shell damage and salt marsh periwinkles (Littoraria irrorata Say) and resistance to future attacks by blue crabs (Callinectes sapidus Rathbun)	Greenfield, B. K.; Lewis, D. B.; Hinke, J. T.	2002	PDF PDF	WL
Montezuma Wetlands Monitoring Project Technical Review Team (TRT) "Kickoff" Meeting Minutes	Montezuma TRT	2002	PDF	WL
Red-Legged Frog Protocol	Padgett-Flohr, G. E.; Jennings, M. R.	2002	PDF	WL
QAPP for environmental monitoring and assessment program West Coast Pilot 2002 Intertidal Assessment: California Intensification	Sutula, M.; Collins, J. N.; Callaway, J.; Parker, T.; Vasey, M.; Wittner, E.	2001	PDF	WL
Montezuma Wetlands Monitoring Project Technical Review Team (TRT) Charter	Lipton, D.; Bonnefil, R.; Levine, J.; Collins, J. N.; Hicks, J.; Jones, P.	2001	PDF	WL
Basic Regional Spatial Analysis of Non - Indigenous Invasive Species (NIS) Spartina Invasions in the San Francisco Estuary	Collins, J. N.; May, M.	2001	PDF	WL
Monitoring the US West Coast: An Assessment of Californias Estuaries and the Pacific Ocean: Year 2002 Wetlands Assessment	San Francisco Estuary Institute	2001	PDF	WL
Wetlands Work at SFEI	San Francisco Estuary Institute	2001	PPT	WL
Introduction to Wetland Monitoring Protocols	San Francisco Estuary Institute	2001	PDF	WL
Program Strategy for the Wetlands Science Program	Collins, J. N.	2001	PDF	WL
Coyote Hills Historic Baylands	Collins, J. N.	2001	PPT	WL
Wildcat Creek 2001 Report	Collins, J. N; Collins, L. M.; Grossinger, R. M.; McKee, L. J.; Riley, A.	2001	HTML	WL
Bay Area Wetlands Regional Monitoring Program (Abstract, SOE 2001)	Collins, J. N.; Jones, P.	2001	PDF	WL
Possible Geomorphic Effects of Invasive Spartina alterniflora in the San Francisco Estuary	Collins, J. N.	2001	PPT	WL
Estuarine Wetlands Restoration in the San Francisco Bay Area: the Roles of Not-for-Profits (Transcript)	Collins, J. N.	2001	PDF	WL
Will Knowing Tidal Elevation Help Explain Variations in Sediment Chemistry and Microbial Processes Among Sample Plots in Tidal Marshes?	Collins, J. N.	2001	PDF	WL
Restoration of the San Francisco Region: the Role of NGOs (Abstract)	Collins, J. N.	2001	PDF	WL
An Overview of the Expected Physical Relationships between the Intertidal and Shallow Bay Zones of the San Francisco Estuary (Transcript)	Collins, J. N.	2001	PDF	WL
Mosquito Landscapes - Part 2 (Transcript)	Collins, J. N.	2001	PDF	WL
Pacific Estuarine Ecosystem Indicators Research Consortium (PEEIR): PEEIR Project Description	Collins, J. N.	2001	PDF	WL
Baylands Ecosystem Habitat Goals	Monroe, M.; Olofson, P. R.; Collins, J. N.; Grossinger, R. M.; Haltiner, J.; Wilcox, C.	1999	PDF	WL
Baylands Ecosystem Habitat Goals Report	San Francisco Estuary Institute	1999	HTML	WL
Effects of the Goals Project (Transcript)	Collins, J. N.	1999	PDF	WL
The Environment of the East Bay Shoreline When Europeans First Arrived (Transcript)	Collins, J. N.	1999	PDF	HEP WL
Evolution and Natural Maintenance of Tidal Marshes in San Pablo Bay (Transcript)	Collins, J. N.	1999	PDF	WL
Mosquito Landscapes - Part 1 (Transcript)	Collins, J. N.	1999	PDF	WL
EcoAtlas Baylands Maps	San Francisco Estuary Institute	1998	HTML	HEP WL
B aylands Ecosystem Habitat Goals: Report on the Process to Set Regional Goals for Wetlands Restoration in the San Francisco Bay Area (Abstract)	Collins, J. N.	1998	PDF	WL
Comments on the Intersection of Land, Water, and People (Transcript)	Collins, J. N.	1998	PDF	WL
Uncertainty in Biodiversity Planning: Lessons from the Bay Area (Transcript)	Collins, J. N.	1998	PDF	WL
Bay Area Wetlands Ecosystem Goals Project: Draft Functional Correspondence between Past and Present Key Habitats	Collins, J. N.	1998	PDF	WL
The Baylands: Past, Present, and Change (Abstract)	Collins, J. N.	1998	PDF	WL
Mosquito Landscapes (Abstract)	Collins, J. N.	1998	PDF	WL
Bay Area Wetlands Ecosystem Goals Project: Key Baylands Habitats	Collins, J. N.	1998	PDF	WL
Bay Area Wetlands Ecosystem Goals Project: Key Baylands Species	Collins, J. N.	1998	PDF	WL
Brief Overview of Historical Suisun Tidal Marsh Form and Ecological Function with Notes on Restoration Science (Transcript)	Collins, J. N.	1997	PDF	WL
Watershed Conference (Transcript)	Collins, J. N.	1997	PDF	WL
Red tide in Berkeley Marina raises concern for toxic blooms in Central Bay	Cole, B.; Cohen, A. N.	1997	PDF	WL
Tidal wetland restoration potential using dredged sediments: a methodology for assessment with examples from the North Bay Area	Gahagan & Bryant Associates; San Francisco Estuary Institute	1996	PDF	WL
Geography of Wetlands in the San Francisco Estuary (Transcript)	Collins, J. N.; Grossinger, R. M.; Der, Z.; Brewster, E.	1996	PDF	WL
What are Data? (Transcript)	Collins, J. N.	1996	PDF	WL
What is a Tidal Marsh?	Collins, J. N.	1996	PDF	WL
Bay Area Wetlands Ecosystem Goals Project: Focus Team Orientation Package	Collins, J. N.; Monroe, M.; Wilcox, C.; Olofson, P.	1995	PDF	WL
Bay Area Wetlands Ecosystem Goals Project: Starting Considerations	Collins, J. N.	1995	PDF	WL
Bay Area Wetlands Ecosystem Goals Project: Focus Team Orientation Talking Points	Collins, J. N.	1995	PDF	WL
A Very Brief Overview on The Histories of Some Marin County Creeks (Transcript)	Collins, J. N.	1995	PDF	WL